Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SMUGS5_RS09465 Genome accession   NC_018089
Coordinates   1953473..1954066 (-) Length   197 a.a.
NCBI ID   WP_014835067.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1948473..1959066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS10265 (SMUGS5_09375) - 1948737..1948949 (-) 213 WP_002262389.1 hypothetical protein -
  SMUGS5_RS09440 (SMUGS5_09380) - 1949076..1949501 (-) 426 WP_002264551.1 hypothetical protein -
  SMUGS5_RS09445 (SMUGS5_09385) spx 1949752..1950150 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  SMUGS5_RS09450 (SMUGS5_09390) recA 1950235..1951386 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  SMUGS5_RS09455 (SMUGS5_09395) cinA 1951426..1952682 (-) 1257 WP_002270966.1 competence/damage-inducible protein A Machinery gene
  SMUGS5_RS09460 (SMUGS5_09400) - 1952831..1953391 (-) 561 WP_002268198.1 DNA-3-methyladenine glycosylase I -
  SMUGS5_RS09465 (SMUGS5_09405) ruvA 1953473..1954066 (-) 594 WP_014835067.1 Holliday junction branch migration protein RuvA Machinery gene
  SMUGS5_RS09470 (SMUGS5_09410) hexB 1954254..1956209 (-) 1956 WP_002280521.1 DNA mismatch repair endonuclease MutL Machinery gene
  SMUGS5_RS10270 - 1956434..1956712 (+) 279 Protein_1844 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21865.10 Da        Isoelectric Point: 6.0086

>NTDB_id=43582 SMUGS5_RS09465 WP_014835067.1 1953473..1954066(-) (ruvA) [Streptococcus mutans GS-5]
MYDYIKGNLTKITAKYIVLEAGGLGYVINVANPYSFSNQINQAIQIYIHHVVRENAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=43582 SMUGS5_RS09465 WP_014835067.1 1953473..1954066(-) (ruvA) [Streptococcus mutans GS-5]
ATGTACGATTATATTAAAGGTAATTTAACCAAAATTACAGCTAAATATATTGTTTTAGAAGCTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAAATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACTGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(153-196)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

71.066

100

0.711
  ruvA Streptococcus pneumoniae D39

71.066

100

0.711
  ruvA Streptococcus pneumoniae TIGR4

71.066

100

0.711
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406

Multiple sequence alignment