Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A3L25_RS03065 Genome accession   NZ_CP050951
Coordinates   674429..674980 (+) Length   183 a.a.
NCBI ID   WP_016497749.1    Uniprot ID   A0A0Q4N073
Organism   Pseudomonas putida strain JQ581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 669429..679980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A3L25_RS03050 (A3L25_003055) bfr 669526..669990 (+) 465 WP_003255449.1 bacterioferritin -
  A3L25_RS03055 (A3L25_003060) uvrA 670061..672895 (-) 2835 WP_016497747.1 excinuclease ABC subunit UvrA -
  A3L25_RS03060 (A3L25_003065) - 673025..674419 (+) 1395 WP_016497748.1 MFS transporter -
  A3L25_RS03065 (A3L25_003070) ssb 674429..674980 (+) 552 WP_016497749.1 single-stranded DNA-binding protein Machinery gene
  A3L25_RS03070 (A3L25_003075) - 675051..675539 (-) 489 WP_080889261.1 heme-binding protein -
  A3L25_RS03075 (A3L25_003080) fdnG 675861..678929 (+) 3069 WP_155737844.1 formate dehydrogenase-N subunit alpha -
  A3L25_RS03080 (A3L25_003085) fdxH 678929..679879 (+) 951 WP_063424888.1 formate dehydrogenase subunit beta -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20301.40 Da        Isoelectric Point: 5.9286

>NTDB_id=435741 A3L25_RS03065 WP_016497749.1 674429..674980(+) (ssb) [Pseudomonas putida strain JQ581]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYNQGGGQQQQYNQAPPRQQAQRPQQAPQR
PAPQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=435741 A3L25_RS03065 WP_016497749.1 674429..674980(+) (ssb) [Pseudomonas putida strain JQ581]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACCGACAAACAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATTGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTTGGCGGCCGTCCGCAAGGCCAGCAGCAAGGCGGCGACCCGTACAACCAGGGTGGCGGCAACTACAACC
AGGGTGGCGGCCAGCAGCAACAGTACAACCAGGCACCGCCTCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGC
CCAGCGCCCCAGCAGCCTGCACCGCAGCCGGCCGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q4N073

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.216

100

0.568
  ssb Glaesserella parasuis strain SC1401

48.969

100

0.519
  ssb Neisseria meningitidis MC58

48.108

100

0.486
  ssb Neisseria gonorrhoeae MS11

48.108

100

0.486