Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HED68_RS04860 Genome accession   NZ_CP050849
Coordinates   1065829..1066887 (+) Length   352 a.a.
NCBI ID   WP_041183432.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain GX2019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1060829..1071887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HED68_RS04850 (HED68_04830) - 1062218..1062868 (-) 651 WP_011407794.1 hypothetical protein -
  HED68_RS04855 (HED68_04835) - 1063184..1065613 (-) 2430 WP_149621371.1 penicillin-binding protein 1A -
  HED68_RS04860 (HED68_04840) comM 1065829..1066887 (+) 1059 WP_041183432.1 pilus assembly protein PilM Machinery gene
  HED68_RS04865 (HED68_04845) - 1066887..1067669 (+) 783 WP_149621372.1 PilN domain-containing protein -
  HED68_RS04870 (HED68_04850) - 1067666..1068331 (+) 666 WP_014504437.1 type 4a pilus biogenesis protein PilO -
  HED68_RS04875 (HED68_04855) - 1068328..1068861 (+) 534 WP_024712440.1 pilus assembly protein PilP -
  HED68_RS04880 (HED68_04860) - 1068881..1070827 (+) 1947 WP_047340127.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37636.30 Da        Isoelectric Point: 4.3882

>NTDB_id=435215 HED68_RS04860 WP_041183432.1 1065829..1066887(+) (comM) [Xanthomonas oryzae pv. oryzicola strain GX2019]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVDAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNIPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=435215 HED68_RS04860 WP_041183432.1 1065829..1066887(+) (comM) [Xanthomonas oryzae pv. oryzicola strain GX2019]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCCGTGGAACCGTTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGATGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGGTCCGGCAGCAAGGCCAAGAACGCGGCCGCGGCC
GTGGCTGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
TCCCGGATATGGTCCAGGTGCTGCTGGCCGCATCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTCTGACTGCCAAAGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCCCTGGTCGCCAGCGAATTGCCGGT
GGCCGCTGACGCAGTCGTGGCGCTGGTGGATATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGTTCCGGTCGCAGTC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGATGAAGTGATGCGCCGTTACGGACTCACCTACGAAGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGTCTACCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGGTTGCTGCAGTTCTTCTATGCAGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGGGTCACCACAGTGGTCGCCAACCCGCTTGCC
CAGATGACGCTGGGTCCGAAAGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  comM Acinetobacter nosocomialis M2

50.852

100

0.509
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474