Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   SMUGS5_RS02915 Genome accession   NC_018089
Coordinates   593409..594347 (+) Length   312 a.a.
NCBI ID   WP_002268795.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 588409..599347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS02895 (SMUGS5_02805) - 588510..589004 (+) 495 WP_002278217.1 GNAT family N-acetyltransferase -
  SMUGS5_RS02900 (SMUGS5_02810) - 589108..590481 (-) 1374 WP_014834887.1 PLP-dependent aminotransferase family protein -
  SMUGS5_RS02905 (SMUGS5_02815) - 590609..591577 (+) 969 WP_002272063.1 alcohol dehydrogenase catalytic domain-containing protein -
  SMUGS5_RS10390 - 591822..592103 (+) 282 Protein_553 hypothetical protein -
  SMUGS5_RS02910 (SMUGS5_02825) - 592209..593102 (+) 894 WP_014834888.1 alpha/beta hydrolase -
  SMUGS5_RS02915 (SMUGS5_02830) coiA 593409..594347 (+) 939 WP_002268795.1 competence protein CoiA Machinery gene
  SMUGS5_RS02920 (SMUGS5_02835) pepF 594369..596168 (+) 1800 WP_014834889.1 oligoendopeptidase F Regulator
  SMUGS5_RS02925 (SMUGS5_02840) - 596385..597002 (+) 618 WP_002278221.1 HAD-IA family hydrolase -
  SMUGS5_RS02930 (SMUGS5_02845) - 597052..597759 (+) 708 WP_014834890.1 O-methyltransferase -
  SMUGS5_RS02935 (SMUGS5_02850) prsA 597821..598822 (+) 1002 WP_002261893.1 peptidylprolyl isomerase PrsA -

Sequence


Protein


Download         Length: 312 a.a.        Molecular weight: 36694.02 Da        Isoelectric Point: 8.7637

>NTDB_id=43509 SMUGS5_RS02915 WP_002268795.1 593409..594347(+) (coiA) [Streptococcus mutans GS-5]
MLVARDKNGKLINLLNGIPDKSDFYCPACQSPVRLKNGRVMRPHFAHVALQDCKFYSENESAEHLNLKAELYQSLSQTES
VEIEKVIPEPEQIADLLVNHNLALEVQCSRLSEARLCERTQAYQANGYQVLWLLGEKLWLDRRLSSLHKQFLYFSQNMGF
HLWELDINRRELRLKYLIYEDIFGKVYYQTRSCSFDGNIMTFLQLPYAKQTLTSYPVHQRRQVGLAIQKQLLARNPRWLR
QQELAYSQGRNLIAQSDADFFPQVRLPQCSRGFCQINQDVSHFSAAFFQYYQKQKDKEIQTLYPPAFYDKMK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=43509 SMUGS5_RS02915 WP_002268795.1 593409..594347(+) (coiA) [Streptococcus mutans GS-5]
ATGTTAGTTGCAAGGGATAAAAATGGAAAGTTGATTAATCTTCTGAATGGTATTCCTGACAAAAGTGATTTTTATTGTCC
TGCCTGCCAATCACCTGTACGTCTCAAAAACGGCAGGGTTATGCGTCCGCATTTTGCCCATGTTGCTTTGCAAGACTGCA
AATTTTACAGTGAAAATGAGTCCGCTGAACACCTAAACTTGAAAGCAGAACTCTATCAGTCATTATCTCAGACGGAAAGT
GTTGAGATCGAAAAAGTCATACCAGAACCTGAACAAATCGCAGACTTATTAGTTAATCATAACCTAGCATTAGAAGTTCA
GTGTTCTCGCTTGTCCGAGGCTCGTCTGTGTGAGCGAACGCAGGCCTATCAGGCCAATGGTTATCAGGTACTGTGGCTGC
TTGGGGAGAAACTCTGGTTGGATAGGCGTTTATCCAGCTTGCACAAACAATTTCTTTACTTTTCACAAAATATGGGCTTT
CATCTTTGGGAATTAGATATTAATAGGCGTGAGTTGCGACTTAAGTACTTGATTTATGAAGATATTTTTGGCAAAGTCTA
TTATCAAACGAGATCTTGTTCTTTTGATGGTAATATCATGACCTTTTTACAATTGCCCTATGCTAAGCAAACTTTGACTT
CTTATCCTGTTCACCAGCGCAGGCAGGTTGGTTTAGCCATTCAAAAACAACTGCTAGCACGCAATCCGCGTTGGCTGCGT
CAGCAAGAACTTGCTTATTCACAGGGGCGTAATCTGATAGCACAATCAGATGCTGATTTTTTCCCGCAGGTAAGGTTACC
GCAATGTTCAAGAGGCTTTTGTCAAATCAATCAGGATGTATCTCATTTTAGCGCAGCTTTTTTTCAATATTATCAAAAGC
AAAAAGACAAAGAAATTCAAACACTGTATCCGCCAGCCTTTTATGATAAAATGAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

47.249

99.038

0.468

  coiA Streptococcus pneumoniae Rx1

46.278

99.038

0.458

  coiA Streptococcus pneumoniae D39

46.278

99.038

0.458

  coiA Streptococcus pneumoniae R6

46.278

99.038

0.458

  coiA Streptococcus pneumoniae TIGR4

45.955

99.038

0.455

  coiA Lactococcus lactis subsp. cremoris KW2

39.385

100

0.41


Multiple sequence alignment