Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   SMUGS5_RS02465 Genome accession   NC_018089
Coordinates   496738..497394 (-) Length   218 a.a.
NCBI ID   WP_002266318.1    Uniprot ID   Q9KWH4
Organism   Streptococcus mutans GS-5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 491738..502394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS02440 (SMUGS5_02345) trpD 492172..493179 (+) 1008 WP_002280744.1 anthranilate phosphoribosyltransferase -
  SMUGS5_RS02445 (SMUGS5_02350) trpC 493172..493939 (+) 768 WP_002280743.1 indole-3-glycerol phosphate synthase TrpC -
  SMUGS5_RS02450 (SMUGS5_02355) - 493926..494507 (+) 582 WP_002272562.1 phosphoribosylanthranilate isomerase -
  SMUGS5_RS02455 (SMUGS5_02360) trpB 494504..495715 (+) 1212 WP_002262056.1 tryptophan synthase subunit beta -
  SMUGS5_RS02460 (SMUGS5_02365) trpA 495719..496501 (+) 783 WP_002264437.1 tryptophan synthase subunit alpha -
  SMUGS5_RS02465 (SMUGS5_02370) cclA/cilC 496738..497394 (-) 657 WP_002266318.1 prepilin peptidase Machinery gene
  SMUGS5_RS02470 (SMUGS5_02375) dpr 497495..498022 (+) 528 WP_002264439.1 DNA starvation/stationary phase protection protein -
  SMUGS5_RS02475 (SMUGS5_02380) - 498229..498435 (+) 207 WP_014834877.1 YqgQ family protein -
  SMUGS5_RS02480 (SMUGS5_02385) - 498428..499399 (+) 972 WP_002268147.1 ROK family glucokinase -
  SMUGS5_RS02485 (SMUGS5_02390) - 499409..499798 (+) 390 WP_002269630.1 rhodanese-like domain-containing protein -
  SMUGS5_RS02490 (SMUGS5_02395) typA 500031..501875 (+) 1845 WP_002262063.1 translational GTPase TypA -
  SMUGS5_RS02495 (SMUGS5_02400) - 501904..502158 (+) 255 WP_002262064.1 DUF3165 family protein -

Sequence


Protein


Download         Length: 218 a.a.        Molecular weight: 24893.10 Da        Isoelectric Point: 8.5763

>NTDB_id=43502 SMUGS5_RS02465 WP_002266318.1 496738..497394(-) (cclA/cilC) [Streptococcus mutans GS-5]
MKLILFFMLGASLGSFFGLVVDRYPQKSIIFPRSHCNKCYNCLTMRDLIPIFSRIINKNSCRFCGYPIPLRYSLVELLCG
LISTGFALDLLTTSQVCLLFMGVLLSLYDLQDQSYPLTLWIGFTFLLMFIYPLNLISLILFLFGIFAALKNINIGSGDFF
YLATLALSLNLQQIIWIIQIASLLGILYSLLFQKHKEPFAFVPFLFLGHLIIIFSHLI

Nucleotide


Download         Length: 657 bp        

>NTDB_id=43502 SMUGS5_RS02465 WP_002266318.1 496738..497394(-) (cclA/cilC) [Streptococcus mutans GS-5]
ATGAAACTTATTTTATTTTTTATGTTAGGAGCTTCTCTTGGCTCTTTCTTTGGCTTAGTTGTTGATCGTTACCCTCAGAA
ATCTATTATATTTCCTAGAAGCCATTGCAATAAGTGTTATAACTGCTTAACCATGAGGGATCTTATCCCAATATTTTCAC
GAATCATCAACAAAAATTCTTGTCGCTTTTGCGGTTACCCTATTCCATTGCGTTATTCCTTGGTAGAATTACTCTGCGGA
CTGATTAGCACAGGTTTTGCTCTTGATTTATTAACCACTTCACAAGTATGTTTGCTCTTCATGGGAGTTCTTTTATCTCT
TTATGATTTACAAGATCAGTCTTATCCTTTGACACTGTGGATAGGCTTTACTTTTCTCTTAATGTTTATCTATCCTCTTA
ACCTAATTAGCTTAATTCTTTTTCTATTTGGTATTTTTGCTGCCCTCAAAAATATTAATATCGGAAGCGGTGATTTCTTC
TATCTGGCTACTTTGGCACTTTCTCTTAATCTTCAGCAAATTATTTGGATTATTCAGATTGCCAGTTTATTAGGAATTCT
TTACAGCCTGCTTTTTCAAAAGCACAAAGAACCTTTTGCTTTTGTTCCTTTCTTATTCTTGGGTCACCTCATTATCATTT
TCTCTCACTTGATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q9KWH4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

42.791

98.624

0.422

  cclA/cilC Streptococcus pneumoniae Rx1

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae D39

42.254

97.706

0.413

  cclA/cilC Streptococcus pneumoniae R6

42.254

97.706

0.413

  cclA/cilC Streptococcus mitis NCTC 12261

41.86

98.624

0.413

  cclA/cilC Streptococcus pneumoniae TIGR4

41.315

97.706

0.404


Multiple sequence alignment