Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SMUGS5_RS02255 Genome accession   NC_018089
Coordinates   457255..457920 (+) Length   221 a.a.
NCBI ID   WP_014834868.1    Uniprot ID   -
Organism   Streptococcus mutans GS-5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 452255..462920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUGS5_RS02235 (SMUGS5_02140) - 452813..453904 (+) 1092 WP_002263029.1 glycerol dehydrogenase -
  SMUGS5_RS02240 (SMUGS5_02145) cysK 454238..455164 (-) 927 WP_014834867.1 cysteine synthase A -
  SMUGS5_RS02245 (SMUGS5_02150) - 455255..455884 (-) 630 WP_002263027.1 YigZ family protein -
  SMUGS5_RS02250 (SMUGS5_02155) comFA/cflA 455957..457258 (+) 1302 WP_002263026.1 DEAD/DEAH box helicase Machinery gene
  SMUGS5_RS02255 (SMUGS5_02160) comFC/cflB 457255..457920 (+) 666 WP_014834868.1 ComF family protein Machinery gene
  SMUGS5_RS02260 (SMUGS5_02165) hpf 457999..458547 (+) 549 WP_002263024.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SMUGS5_RS02265 (SMUGS5_02170) - 458671..459765 (+) 1095 WP_002273626.1 hypothetical protein -
  SMUGS5_RS02270 (SMUGS5_02175) - 459785..461485 (+) 1701 WP_002263022.1 zinc ribbon domain-containing protein -
  SMUGS5_RS02275 (SMUGS5_02180) - 461565..462200 (-) 636 WP_002264406.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 26017.05 Da        Isoelectric Point: 8.9825

>NTDB_id=43499 SMUGS5_RS02255 WP_014834868.1 457255..457920(+) (comFC/cflB) [Streptococcus mutans GS-5]
MNCLICHLPFESKYYFYSIFFLKTSRDFVCPPCFAKFQFISEKHCLNCYKEGEGDICQDCHKWQNLKKEVHHKALFCYNQ
AMKDYFSAYKFQGDYLLRKVFIKPVKEALREYTNYTLVPIPLSSSSLENRGFNQVQAFLDEAKLSYHDLLGKEDGSVKQS
SKTRQERLKTQQNFYLRKHKELPDKVMLVDDIYTTGMTIQLASQLLRENGVKTIKSFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=43499 SMUGS5_RS02255 WP_014834868.1 457255..457920(+) (comFC/cflB) [Streptococcus mutans GS-5]
ATGAACTGTCTCATTTGTCACTTGCCTTTTGAGAGTAAATATTATTTCTATTCTATTTTCTTCTTGAAAACTTCAAGAGA
TTTTGTTTGCCCACCTTGCTTTGCGAAATTTCAATTCATATCTGAAAAACATTGCCTAAATTGTTATAAGGAGGGAGAAG
GAGATATCTGTCAAGATTGCCACAAATGGCAAAATCTCAAAAAGGAGGTTCATCACAAGGCTCTCTTTTGTTACAATCAA
GCTATGAAAGATTATTTCAGTGCTTACAAATTTCAAGGGGATTATCTTTTAAGAAAGGTCTTTATAAAGCCTGTTAAAGA
AGCCTTAAGAGAGTATACTAATTATACTTTGGTTCCCATTCCACTCAGCTCTTCAAGTTTAGAGAATCGTGGTTTTAATC
AAGTGCAAGCTTTTTTAGATGAGGCAAAATTGTCTTATCATGATTTATTAGGCAAAGAAGATGGTAGTGTAAAACAATCA
AGTAAAACACGTCAAGAACGCCTAAAGACTCAACAAAACTTTTATTTAAGGAAACATAAAGAATTACCTGATAAAGTGAT
GCTAGTTGATGATATCTATACAACGGGTATGACAATTCAATTGGCCAGTCAATTATTGCGTGAAAATGGTGTGAAAACAA
TAAAATCCTTTTCTTTAGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

44.796

100

0.448
  comFC/cflB Streptococcus mitis NCTC 12261

44.796

100

0.448
  comFC/cflB Streptococcus pneumoniae Rx1

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae D39

44.344

100

0.443
  comFC/cflB Streptococcus pneumoniae R6

44.344

100

0.443
  comFC/cflB Streptococcus mitis SK321

43.891

100

0.439