Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HC164_RS19410 Genome accession   NZ_CP050793
Coordinates   4248607..4249182 (+) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media strain FiBL-02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4243607..4254182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC164_RS19395 - 4244219..4244344 (+) 126 WP_005328766.1 hypothetical protein -
  HC164_RS19400 (HC164_19400) uvrA 4244527..4247355 (-) 2829 WP_404837292.1 excinuclease ABC subunit UvrA -
  HC164_RS19405 (HC164_19405) - 4247450..4248088 (-) 639 WP_342058598.1 LuxR C-terminal-related transcriptional regulator -
  HC164_RS19410 (HC164_19410) ssb 4248607..4249182 (+) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene
  HC164_RS19415 (HC164_19415) - 4249339..4250109 (+) 771 WP_404837293.1 substrate-binding periplasmic protein -
  HC164_RS19420 - 4250158..4250280 (-) 123 WP_080675244.1 hypothetical protein -
  HC164_RS19425 (HC164_19420) yjbD 4250632..4250916 (+) 285 WP_404837294.1 DUF3811 domain-containing protein -
  HC164_RS19430 (HC164_19425) cspA 4251310..4251522 (+) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  HC164_RS19435 (HC164_19430) - 4251830..4253785 (+) 1956 WP_404837295.1 ligand-gated channel protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=434881 HC164_RS19410 WP_005328769.1 4248607..4249182(+) (ssb) [Aeromonas media strain FiBL-02]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=434881 HC164_RS19410 WP_005328769.1 4248607..4249182(+) (ssb) [Aeromonas media strain FiBL-02]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGTGTGGTCTTCATGGGCAAGCTGGCCGAAGTGGCGGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGACCAGAGTGGCCAGGAGCGTTACACCACAGAAGTGCTTGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGCGCCGGCCAGGGCATGGGCGGTCAACAGTCCCAGGGCA
ACTGGGGCCAGCCGCAACAGGCAGCTCCCCAGCAAGCCATGCAACGCCCGGCCGCAGCCCCGCAGCAGAATATGCAGCCA
CAGGGTGGTTACGGTCGTCCGGCCCAGCAGCCCCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGACGA
CGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45