Detailed information NTG0043480

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SMUGS5_RS00360
• Genome accession: NC_018089
• Coordinates: 62502..63497 (+)
• Length: 331 a.a.
• NCBI ID: WP_002269367.1
• Uniprot ID: -
• Organism: Streptococcus mutans GS-5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 57502..68497

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMUGS5_RS00345	-	57874..58563 (+)	690	WP_042899543.1	DNA alkylation repair protein	-
SMUGS5_RS00350 (SMUGS5_00260)	comR	58946..59860 (+)	915	WP_002307469.1	helix-turn-helix domain-containing protein	Regulator
SMUGS5_RS00355 (SMUGS5_00265)	-	60322..62166 (-)	1845	WP_002267914.1	carbohydrate-binding domain-containing protein	-
SMUGS5_RS00360 (SMUGS5_00270)	ruvB	62502..63497 (+)	996	WP_002269367.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SMUGS5_RS00365 (SMUGS5_00275)	-	63535..63960 (+)	426	WP_002263403.1	low molecular weight protein-tyrosine-phosphatase	-
SMUGS5_RS00370 (SMUGS5_00280)	-	64025..64408 (+)	384	WP_011074470.1	membrane protein	-
SMUGS5_RS00375 (SMUGS5_00285)	-	64405..66195 (+)	1791	WP_014834784.1	acyltransferase family protein	-
SMUGS5_RS00380 (SMUGS5_00295)	thrC	66877..68361 (+)	1485	WP_002267913.1	threonine synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37271.71 Da
• Isoelectric Point: 4.7070

>NTDB_id=43480 SMUGS5_RS00360 WP_002269367.1 62502..63497(+) (ruvB) [Streptococcus mutans GS-5]
MTRILDNEPMGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DKITDKALTMLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATAK
AYEHLGYRYTE

Nucleotide

• Length: 996 bp

>NTDB_id=43480 SMUGS5_RS00360 WP_002269367.1 62502..63497(+) (ruvB) [Streptococcus mutans GS-5]
ATGACTAGAATTTTAGATAACGAACCTATGGGTGATGAGGAATTTGCAGAACGCACACTTCGTCCGCAGTATTTACAGGA
ATATATTGGTCAGGATAAGGTTAAAGACCAGCTGAAGATCTTCATCAAAGCAGCTAAACAACGTGATGAGGCTTTGGATC
ATGTCCTTTTATTTGGTCCTCCCGGCCTTGGTAAGACCACCATGGCTTTTGTTATTGCCAATGAATTGGGGGTTAATCTT
AAGCAAACCAGCGGTCCAGCTATTGAAAAAGCTGGTGATTTGGTTGCTGTTTTAAATGATTTAGAGCCTGGAGATGTTCT
TTTTATTGATGAAATTCATCGGCTGCCTATGGCTGTTGAGGAAGTTCTTTATAGTGCCATGGAAGATTTTTATATTGACA
TTATGATTGGTGCGGGAGAAACTTCTCGCAGCGTGCATTTGGATTTGCCGCCTTTTACTTTAATTGGGGCGACAACACGG
GCAGGTATGTTGTCAAATCCTTTGCGGGCGCGTTTTGGGATTACAGGTCATATGGAATATTATACAGATATCGATTTAAC
TGAAATTGTTGAGCGAACAGCGGATATTTTTGAGATGACCATTACCCATCAAGCTGCGTTAGAATTAGCACGGCGTTCCC
GTGGGACTCCGCGTATTGCTAACCGACTCTTAAAACGTGTCCGAGATTATGCCCAAATTATGGGAGATGGTCTTATTGAT
GATAAAATAACAGATAAAGCTTTGACCATGCTTGATGTTGATCATGAAGGCCTTGATTATGTTGATCAGAAGATCCTTAA
GACGATGATTGAGATGTACCATGGCGGGCCTGTTGGTCTGGGGACTCTGTCAGTTAATATTGCCGAGGAACGTGAGACCG
TTGAAGACATGTATGAGCCCTATCTTATTCAAAAGGGATTTATCATACGGACTCGCAGTGGACGTGTAGCCACTGCCAAA
GCTTATGAACATTTGGGTTATCGTTACACAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	91.239	100	0.912
ruvB	Streptococcus pneumoniae R6	90.937	100	0.909
ruvB	Streptococcus pneumoniae D39	90.937	100	0.909
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.991	97.583	0.595
ruvB	Helicobacter pylori 26695	50.464	97.583	0.492
ruvB	Synechocystis sp. PCC 6803	50.479	94.562	0.477