Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HC168_RS19365 Genome accession   NZ_CP050789
Coordinates   4208738..4209313 (+) Length   191 a.a.
NCBI ID   WP_139744800.1    Uniprot ID   A0AAP4J776
Organism   Aeromonas media strain FiBL-4043     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4203738..4214313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC168_RS19350 - 4204357..4204482 (+) 126 WP_005328766.1 hypothetical protein -
  HC168_RS19355 (HC168_19360) uvrA 4204658..4207486 (-) 2829 WP_111911710.1 excinuclease ABC subunit UvrA -
  HC168_RS19360 (HC168_19365) - 4207581..4208219 (-) 639 WP_162472085.1 LuxR C-terminal-related transcriptional regulator -
  HC168_RS19365 (HC168_19370) ssb 4208738..4209313 (+) 576 WP_139744800.1 single-stranded DNA-binding protein Machinery gene
  HC168_RS19370 (HC168_19375) - 4209471..4210241 (+) 771 WP_395949089.1 substrate-binding periplasmic protein -
  HC168_RS19375 - 4210290..4210412 (-) 123 WP_080675244.1 hypothetical protein -
  HC168_RS19380 (HC168_19380) yjbD 4210764..4211048 (+) 285 WP_162519186.1 DUF3811 domain-containing protein -
  HC168_RS19385 (HC168_19385) cspA 4211442..4211654 (+) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  HC168_RS19390 (HC168_19390) - 4211962..4213917 (+) 1956 WP_404835575.1 ligand-gated channel protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=434770 HC168_RS19365 WP_139744800.1 4208738..4209313(+) (ssb) [Aeromonas media strain FiBL-4043]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQGGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYSRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=434770 HC168_RS19365 WP_139744800.1 4208738..4209313(+) (ssb) [Aeromonas media strain FiBL-4043]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AGTGGCACCGTGTGGTCTTCATGGGCAAGCTGGCCGAAGTGGCGGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGGGCGGCCAGGAGCGTTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGCCAGCCGCAACAGGCCGCCCCCCAGCAAGCGATGCAGCGCCCGGCCGCAGCCCCGCAGCAGAATATGCAACCA
CAGGGTGGTTACAGTCGTCCGGCCCAGCAGCCGCAGTCCGCACCGCCGGTCTACAACGAACCGCCGATGGATTTCGACGA
CGATATCCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.231

100

0.707
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45