Detailed information NTG0434740

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HC169_RS19260
• Genome accession: NZ_CP050788
• Coordinates: 4131204..4132076 (+)
• Length: 290 a.a.
• NCBI ID: WP_404839558.1
• Uniprot ID: -
• Organism: Aeromonas media strain FiBL-4359
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4126204..4137076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HC169_RS19240 (HC169_19215)	nadC	4126487..4127350 (+)	864	WP_394293767.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HC169_RS19245 (HC169_19220)	-	4127663..4128037 (+)	375	WP_404839556.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
HC169_RS19250 (HC169_19225)	pilB	4128045..4129751 (+)	1707	WP_404839557.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
HC169_RS19255 (HC169_19230)	pilC	4129882..4131123 (+)	1242	WP_106885656.1	type II secretion system F family protein	Machinery gene
HC169_RS19260 (HC169_19235)	pilD	4131204..4132076 (+)	873	WP_404839558.1	prepilin peptidase	Machinery gene
HC169_RS19265 (HC169_19240)	coaE	4132095..4132709 (+)	615	WP_404839559.1	dephospho-CoA kinase	-
HC169_RS19270 (HC169_19245)	zapD	4132747..4133469 (+)	723	WP_307765796.1	cell division protein ZapD	-
HC169_RS19275 (HC169_19250)	yacG	4133482..4133676 (+)	195	WP_042053535.1	DNA gyrase inhibitor YacG	-
HC169_RS19280 (HC169_19255)	mutT	4133751..4134155 (-)	405	WP_404839560.1	8-oxo-dGTP diphosphatase MutT	-
HC169_RS19285 (HC169_19260)	secA	4134311..4137031 (-)	2721	WP_404839561.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31933.15 Da
• Isoelectric Point: 6.4805

>NTDB_id=434740 HC169_RS19260 WP_404839558.1 4131204..4132076(+) (pilD) [Aeromonas media strain FiBL-4359]
MVPLIELAQGLPWLYLSLVFLFSLMVGSFLNVVIHRLPIMLEREWHAEYSDYFGSEVAASPADPYNLMVPRSRCPHCDHP
IGALENIPLLSWLWLKGRCRQCQAPISARYPLVELLTALLSVAVAATLAPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=434740 HC169_RS19260 WP_404839558.1 4131204..4132076(+) (pilD) [Aeromonas media strain FiBL-4359]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGGTTTTTCTCTTCTCCCTGATGGTTGG
CAGCTTTCTGAACGTGGTGATCCATCGCCTGCCCATCATGTTGGAGCGGGAGTGGCATGCCGAATACAGTGACTACTTCG
GCAGCGAAGTGGCCGCCTCCCCCGCCGACCCCTACAACCTGATGGTGCCGCGCTCCCGCTGCCCCCACTGCGATCACCCC
ATAGGCGCGCTGGAAAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGGCGCTGCCGGCAATGCCAGGCGCCTATCTC
GGCTCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCGCCGTCGCCGCGACCTTGGCTCCGGGATGGGGCA
CCCTGGCTGCGCTCCTGCTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGTTGCTGCCGGACCAA
CTCACACTGCCGCTGCTGTGGGGCGGTCTGCTGTTCAATCTGGCGGGGGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCGTTCAAGCTGCTGACTGGTAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCGTCACTG
GTCGGCGCCATCATCGGCATAGGGCTCATACTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTATCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.189	98.621	0.603
pilD	Vibrio campbellii strain DS40M4	57.439	99.655	0.572
pilD	Acinetobacter nosocomialis M2	53.237	95.862	0.51
pilD	Acinetobacter baumannii D1279779	52.878	95.862	0.507
pilD	Neisseria gonorrhoeae MS11	50	91.724	0.459