Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HC170_RS01750 Genome accession   NZ_CP050786
Coordinates   380636..381211 (-) Length   191 a.a.
NCBI ID   WP_005328769.1    Uniprot ID   -
Organism   Aeromonas media strain DSM 4881     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 375636..386211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC170_RS01720 (HC170_01715) - 375954..376676 (+) 723 WP_041207099.1 response regulator -
  HC170_RS01725 (HC170_01720) - 376684..378069 (+) 1386 WP_042648577.1 ATP-binding protein -
  HC170_RS01730 (HC170_01725) cspA 378307..378519 (-) 213 WP_025328559.1 RNA chaperone/antiterminator CspA -
  HC170_RS01735 (HC170_01730) yjbD 378913..379197 (-) 285 WP_025328558.1 DUF3811 domain-containing protein -
  HC170_RS01740 - 379538..379660 (+) 123 WP_080675244.1 hypothetical protein -
  HC170_RS01745 (HC170_01735) - 379709..380479 (-) 771 WP_005328770.1 ABC transporter substrate-binding protein -
  HC170_RS01750 (HC170_01740) ssb 380636..381211 (-) 576 WP_005328769.1 single-stranded DNA-binding protein Machinery gene
  HC170_RS01755 (HC170_01745) - 381727..382365 (+) 639 WP_139750669.1 LuxR C-terminal-related transcriptional regulator -
  HC170_RS01760 (HC170_01750) uvrA 382460..385288 (+) 2829 WP_005328767.1 excinuclease ABC subunit UvrA -
  HC170_RS01765 - 385475..385600 (-) 126 WP_005328766.1 hypothetical protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20953.37 Da        Isoelectric Point: 5.9247

>NTDB_id=434690 HC170_RS01750 WP_005328769.1 380636..381211(-) (ssb) [Aeromonas media strain DSM 4881]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSDTWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGAGQGMGGQQSQGNWGQPQQAAPQQAMQRPAAAPQQNMQP
QGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=434690 HC170_RS01750 WP_005328769.1 380636..381211(-) (ssb) [Aeromonas media strain DSM 4881]
ATGGCCAGTCGAGGCATCAACAAAGTCATTCTGATCGGTAACCTGGGGCAAGACCCGGAAGTGCGCTACATGCCGAGCGG
CGGTGCCGTGACTAACATCACCCTGGCCACCTCCGACACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGAACCG
AGTGGCACCGCGTGGTGTTCATGGGCAAGCTGGCCGAAGTGGCCGGCGAGTACCTGAAGAAGGGTTCCCAGGTCTATGTC
GAAGGCAAGCTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGTTACACCACAGAGGTGCTGGTCGACAGCTT
CACCGGCGTAATGCAGATGCTGGGCGGCCGTCCGCAAGGCGGCGCAGGCCAGGGCATGGGTGGTCAACAGTCCCAGGGCA
ACTGGGGTCAGCCACAACAGGCCGCCCCCCAGCAAGCGATGCAACGCCCGGCCGCCGCCCCGCAGCAGAATATGCAGCCG
CAGGGTGGTTACGGTCGTCCTGCCCAGCAGCCTCAGTCTGCACCGCCGGTCTACAACGAGCCGCCGATGGATTTCGACGA
CGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.744

100

0.712
  ssb Glaesserella parasuis strain SC1401

53.968

98.953

0.534
  ssb Neisseria meningitidis MC58

46.809

98.429

0.461
  ssb Neisseria gonorrhoeae MS11

46.237

97.382

0.45