Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HCU65_RS17940 Genome accession   NZ_CP050705
Coordinates   3599259..3599948 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain PENSV20     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3594259..3604948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS17905 (HCU65_17950) - 3594438..3594920 (-) 483 WP_061669176.1 flagellar protein FlgN -
  HCU65_RS17910 (HCU65_17955) flgM 3594936..3595196 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  HCU65_RS17915 (HCU65_17960) - 3595276..3595695 (-) 420 WP_219946697.1 TIGR03826 family flagellar region protein -
  HCU65_RS17920 (HCU65_17965) comFC 3595767..3596489 (-) 723 WP_258235433.1 double zinc ribbon domain-containing protein Machinery gene
  HCU65_RS17925 (HCU65_17970) - 3596453..3596749 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  HCU65_RS17930 (HCU65_17975) comFA 3596806..3598203 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  HCU65_RS17935 (HCU65_17980) - 3598310..3599152 (-) 843 WP_003326716.1 DegV family protein -
  HCU65_RS17940 (HCU65_17985) degU 3599259..3599948 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HCU65_RS17945 (HCU65_17990) degS 3600025..3601188 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  HCU65_RS17950 (HCU65_17995) - 3601406..3602059 (+) 654 WP_003326713.1 YigZ family protein -
  HCU65_RS17955 (HCU65_18000) - 3602059..3603315 (+) 1257 WP_219946698.1 LCP family protein -
  HCU65_RS17960 (HCU65_18005) - 3603406..3604482 (-) 1077 WP_003326711.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=434153 HCU65_RS17940 WP_003219701.1 3599259..3599948(-) (degU) [Bacillus atrophaeus strain PENSV20]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=434153 HCU65_RS17940 WP_003219701.1 3599259..3599948(-) (degU) [Bacillus atrophaeus strain PENSV20]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTCGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1