Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HCU65_RS17920 Genome accession   NZ_CP050705
Coordinates   3595767..3596489 (-) Length   240 a.a.
NCBI ID   WP_258235433.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3590767..3601489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS17885 (HCU65_17930) fliW 3590910..3591341 (-) 432 WP_061570800.1 flagellar assembly protein FliW -
  HCU65_RS17890 (HCU65_17935) - 3591376..3591942 (-) 567 WP_219947841.1 DUF6470 family protein -
  HCU65_RS17895 (HCU65_17940) flgL 3591990..3592886 (-) 897 WP_003326725.1 flagellar hook-associated protein FlgL -
  HCU65_RS17900 (HCU65_17945) flgK 3592898..3594421 (-) 1524 WP_219946696.1 flagellar hook-associated protein FlgK -
  HCU65_RS17905 (HCU65_17950) - 3594438..3594920 (-) 483 WP_061669176.1 flagellar protein FlgN -
  HCU65_RS17910 (HCU65_17955) flgM 3594936..3595196 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  HCU65_RS17915 (HCU65_17960) - 3595276..3595695 (-) 420 WP_219946697.1 TIGR03826 family flagellar region protein -
  HCU65_RS17920 (HCU65_17965) comFC 3595767..3596489 (-) 723 WP_258235433.1 double zinc ribbon domain-containing protein Machinery gene
  HCU65_RS17925 (HCU65_17970) - 3596453..3596749 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  HCU65_RS17930 (HCU65_17975) comFA 3596806..3598203 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  HCU65_RS17935 (HCU65_17980) - 3598310..3599152 (-) 843 WP_003326716.1 DegV family protein -
  HCU65_RS17940 (HCU65_17985) degU 3599259..3599948 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HCU65_RS17945 (HCU65_17990) degS 3600025..3601188 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27652.84 Da        Isoelectric Point: 8.2726

>NTDB_id=434151 HCU65_RS17920 WP_258235433.1 3595767..3596489(-) (comFC) [Bacillus atrophaeus strain PENSV20]
MCDEKKRGAKKLNCLLCDSQFSQSLTWRSLFLLEPDEKVCHPCKKQLQRIAGTVCPSCGRPQNTNEKCPDCTEWESRIDR
GFLLSRNRSVYLYNEMMKESLARFKFRGDAELLHVFKTDFVSEFSTVYPEKSYVLIPIPLSEERKAERGFNQSELLAKCL
DRPIIHSLTRLDNEKQSKKNKAERLLFKRVFDTEINSVEDMDVILIDDLYTTGATLHHAARCLLEKGKAGSVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=434151 HCU65_RS17920 WP_258235433.1 3595767..3596489(-) (comFC) [Bacillus atrophaeus strain PENSV20]
TTGTGTGACGAAAAAAAGAGAGGAGCAAAAAAGCTGAACTGCTTATTGTGTGATTCGCAGTTTTCTCAATCTCTTACGTG
GAGATCTTTATTTTTATTAGAGCCGGACGAAAAGGTCTGTCATCCGTGCAAAAAACAATTACAAAGGATCGCAGGAACGG
TTTGCCCTTCATGCGGCAGACCTCAAAACACAAATGAAAAATGCCCCGATTGCACCGAATGGGAATCAAGGATTGATAGA
GGCTTCCTTTTAAGCCGAAACCGTTCTGTTTATTTATATAATGAGATGATGAAAGAATCGCTGGCCCGTTTTAAATTTAG
AGGAGACGCAGAGCTTTTGCATGTTTTTAAGACTGATTTTGTATCGGAATTTTCAACTGTCTATCCTGAAAAAAGCTATG
TGCTCATTCCAATCCCGCTGAGTGAGGAACGGAAAGCAGAGCGCGGGTTTAACCAGTCAGAGCTTCTGGCGAAATGTTTA
GACCGGCCCATCATTCATTCCCTAACCCGTCTGGATAATGAAAAACAATCCAAGAAAAACAAAGCAGAACGGCTCCTTTT
CAAACGTGTTTTTGATACTGAAATCAATTCCGTTGAAGATATGGATGTCATATTAATCGACGATCTTTATACCACTGGCG
CTACCTTACACCATGCAGCCCGCTGTTTATTGGAAAAAGGAAAAGCAGGCTCTGTGTCCTCTTTTACTTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667