Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HCU65_RS17930 Genome accession   NZ_CP050705
Coordinates   3596806..3598203 (-) Length   465 a.a.
NCBI ID   WP_003326717.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain PENSV20     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3591806..3603203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCU65_RS17895 (HCU65_17940) flgL 3591990..3592886 (-) 897 WP_003326725.1 flagellar hook-associated protein FlgL -
  HCU65_RS17900 (HCU65_17945) flgK 3592898..3594421 (-) 1524 WP_219946696.1 flagellar hook-associated protein FlgK -
  HCU65_RS17905 (HCU65_17950) - 3594438..3594920 (-) 483 WP_061669176.1 flagellar protein FlgN -
  HCU65_RS17910 (HCU65_17955) flgM 3594936..3595196 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  HCU65_RS17915 (HCU65_17960) - 3595276..3595695 (-) 420 WP_219946697.1 TIGR03826 family flagellar region protein -
  HCU65_RS17920 (HCU65_17965) comFC 3595767..3596489 (-) 723 WP_258235433.1 double zinc ribbon domain-containing protein Machinery gene
  HCU65_RS17925 (HCU65_17970) - 3596453..3596749 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  HCU65_RS17930 (HCU65_17975) comFA 3596806..3598203 (-) 1398 WP_003326717.1 ATP-dependent helicase ComFA Machinery gene
  HCU65_RS17935 (HCU65_17980) - 3598310..3599152 (-) 843 WP_003326716.1 DegV family protein -
  HCU65_RS17940 (HCU65_17985) degU 3599259..3599948 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HCU65_RS17945 (HCU65_17990) degS 3600025..3601188 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  HCU65_RS17950 (HCU65_17995) - 3601406..3602059 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53243.85 Da        Isoelectric Point: 10.0443

>NTDB_id=434152 HCU65_RS17930 WP_003326717.1 3596806..3598203(-) (comFA) [Bacillus atrophaeus strain PENSV20]
MQTELEKKPLFSADLQQFLHHRHLLRTEIPFSEELINWHIEHGFISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKVSALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLARSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTIPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKYAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=434152 HCU65_RS17930 WP_003326717.1 3596806..3598203(-) (comFA) [Bacillus atrophaeus strain PENSV20]
ATGCAGACTGAGTTGGAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCACCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTTTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCGGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGTGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGATGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCGCATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACATCACCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCAGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGTAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTATTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGCGCACTCGTCCAAATCGCCGGGAGGACAGGGCGGCATAAAAA
ATATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-425)

Type III restriction enzyme, res subunit (ResIII)

(123-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.774

100

0.768