Detailed information
Bioinformatically predicted
Overview
| Name | ruvA | Type | Machinery gene |
| Locus tag | SCIM_RS08895 | Genome accession | NC_018073 |
| Coordinates | 1816634..1817224 (-) | Length | 196 a.a. |
| NCBI ID | WP_003077156.1 | Uniprot ID | - |
| Organism | Streptococcus intermedius JTH08 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1811634..1822224
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SCIM_RS10140 | - | 1815012..1815333 (+) | 322 | Protein_1722 | transposase | - |
| SCIM_RS08885 (SCIM_1599) | - | 1815406..1816064 (-) | 659 | Protein_1723 | lysostaphin resistance A-like protein | - |
| SCIM_RS08890 (SCIM_1600) | - | 1816069..1816623 (-) | 555 | WP_003077403.1 | DNA-3-methyladenine glycosylase I | - |
| SCIM_RS08895 (SCIM_1601) | ruvA | 1816634..1817224 (-) | 591 | WP_003077156.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| SCIM_RS08900 (SCIM_1602) | - | 1817394..1817900 (+) | 507 | WP_037589496.1 | helix-turn-helix domain-containing protein | - |
| SCIM_RS08905 (SCIM_1603) | - | 1817884..1818393 (+) | 510 | WP_003077229.1 | RDD family protein | - |
| SCIM_RS08910 (SCIM_1604) | hexB | 1818539..1820485 (-) | 1947 | WP_003077366.1 | DNA mismatch repair endonuclease MutL | Machinery gene |
| SCIM_RS08915 (SCIM_1605) | - | 1820581..1821726 (-) | 1146 | WP_003077372.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 21601.03 Da Isoelectric Point: 5.6978
>NTDB_id=43367 SCIM_RS08895 WP_003077156.1 1816634..1817224(-) (ruvA) [Streptococcus intermedius JTH08]
MYEYLKGIITKITAKYIVLEVNAIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFSTEEEKQLFLSLISVSGI
GPVSALAIIAADDNTGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK
MYEYLKGIITKITAKYIVLEVNAIGYILHVANPYAYSGHLHQEAKVYVHQVVREDAELLYGFSTEEEKQLFLSLISVSGI
GPVSALAIIAADDNTGLVQAIEQKNITYLTKFPKIGKKTAQQMVLDLEGKVVAADGPAESKAPVQTVDNQELEEAMEAML
ALGYKAAELKKIKKFFEGTTDTAENYIKSALKMLVK
Nucleotide
Download Length: 591 bp
>NTDB_id=43367 SCIM_RS08895 WP_003077156.1 1816634..1817224(-) (ruvA) [Streptococcus intermedius JTH08]
ATGTACGAATATTTAAAAGGAATTATTACCAAAATCACAGCTAAATACATTGTTTTGGAAGTCAATGCTATTGGGTACAT
ACTTCACGTGGCCAACCCCTATGCTTACTCAGGTCATCTTCATCAGGAAGCCAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGACGCGGAGCTTCTATATGGTTTTTCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGTCCTGTGTCTGCTTTGGCTATTATTGCTGCAGATGATAATACTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAACAGATGGTACTGGACTTAGAAGGCAAAGTAGTGGCTG
CAGATGGTCCGGCAGAAAGCAAGGCGCCCGTTCAGACTGTGGATAATCAGGAGCTGGAGGAAGCCATGGAAGCCATGCTG
GCTCTGGGATACAAGGCTGCTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAATTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG
ATGTACGAATATTTAAAAGGAATTATTACCAAAATCACAGCTAAATACATTGTTTTGGAAGTCAATGCTATTGGGTACAT
ACTTCACGTGGCCAACCCCTATGCTTACTCAGGTCATCTTCATCAGGAAGCCAAGGTCTATGTGCACCAGGTGGTGAGAG
AAGACGCGGAGCTTCTATATGGTTTTTCGACTGAGGAGGAGAAGCAACTCTTTCTCAGCTTGATTTCAGTCTCAGGTATT
GGTCCTGTGTCTGCTTTGGCTATTATTGCTGCAGATGATAATACTGGCTTAGTGCAAGCCATTGAGCAGAAAAACATCAC
CTACCTGACCAAGTTTCCTAAGATTGGCAAGAAGACAGCCCAACAGATGGTACTGGACTTAGAAGGCAAAGTAGTGGCTG
CAGATGGTCCGGCAGAAAGCAAGGCGCCCGTTCAGACTGTGGATAATCAGGAGCTGGAGGAAGCCATGGAAGCCATGCTG
GCTCTGGGATACAAGGCTGCTGAACTTAAGAAAATCAAGAAATTCTTTGAAGGCACAACTGATACAGCTGAAAATTATAT
CAAGTCAGCTCTCAAGATGTTGGTGAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvA | Streptococcus pneumoniae TIGR4 |
85.279 |
100 |
0.857 |
| ruvA | Streptococcus pneumoniae R6 |
85.279 |
100 |
0.857 |
| ruvA | Streptococcus pneumoniae D39 |
85.279 |
100 |
0.857 |
| ruvA | Bacillus subtilis subsp. subtilis str. 168 |
41.827 |
100 |
0.444 |