Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GM240_RS00085 Genome accession   NZ_CP050509
Coordinates   15394..15924 (+) Length   176 a.a.
NCBI ID   WP_053348322.1    Uniprot ID   A0AAX0RZL2
Organism   Peribacillus butanolivorans strain KJ40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 10394..20924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GM240_RS00055 (GM240_00055) - 10711..11412 (+) 702 WP_053348316.1 DUF554 domain-containing protein -
  GM240_RS00060 (GM240_00060) yyaC 11480..12115 (-) 636 WP_053348317.1 spore protease YyaC -
  GM240_RS00065 (GM240_00065) - 12510..13346 (+) 837 WP_190270517.1 mechanosensitive ion channel family protein -
  GM240_RS00070 (GM240_00070) - 13367..13564 (+) 198 WP_098177045.1 DUF951 domain-containing protein -
  GM240_RS00075 (GM240_00075) ychF 13731..14831 (+) 1101 WP_053348320.1 redox-regulated ATPase YchF -
  GM240_RS00080 (GM240_00080) rpsF 15040..15324 (+) 285 WP_034316153.1 30S ribosomal protein S6 -
  GM240_RS00085 (GM240_00085) ssbA 15394..15924 (+) 531 WP_053348322.1 single-stranded DNA-binding protein Machinery gene
  GM240_RS00090 (GM240_00090) rpsR 15972..16211 (+) 240 WP_053348323.1 30S ribosomal protein S18 -
  GM240_RS00095 (GM240_00095) - 16489..17430 (+) 942 WP_098177046.1 YybS family protein -
  GM240_RS00100 (GM240_00100) - 17466..19435 (+) 1970 Protein_19 DHH family phosphoesterase -
  GM240_RS00105 (GM240_00105) rplI 19432..19881 (+) 450 WP_098177048.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19548.20 Da        Isoelectric Point: 4.8282

>NTDB_id=433527 GM240_RS00085 WP_053348322.1 15394..15924(+) (ssbA) [Peribacillus butanolivorans strain KJ40]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQRSYNNNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPF
ANDGKTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=433527 GM240_RS00085 WP_053348322.1 15394..15924(+) (ssbA) [Peribacillus butanolivorans strain KJ40]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCTGTGGC
TACCTTTACTTTGGCTGTGAACCGTAGTTTTACGAATCAGTCGGGTGAACGTGAAGCAGATTTCATTAACTGTGTAGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAAGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGAGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAGAAGTTATAACAACAATAATAACGGAAATG
ACAACAATTCGTATGGGCAAAATCCTAATCAGAATCAACGGAGCAACAACAACTACACTCGTGTAGATGATGATCCATTT
GCAAATGACGGTAAAACAATCGACATTTCAGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.715

100

0.699
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

60.227

0.381
  ssb Glaesserella parasuis strain SC1401

35.829

100

0.381