Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HB763_RS11240 Genome accession   NZ_CP050475
Coordinates   2413087..2413674 (+) Length   195 a.a.
NCBI ID   WP_005428539.1    Uniprot ID   A0AAQ2XWF3
Organism   Vibrio campbellii strain LJC012     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2408087..2418674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS11220 (HB763_11240) panP 2408296..2409942 (-) 1647 WP_255984078.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  HB763_RS11225 (HB763_11245) - 2410064..2410576 (-) 513 WP_255984079.1 hypothetical protein -
  HB763_RS11230 (HB763_11250) - 2410786..2411691 (-) 906 WP_255901890.1 lysine exporter LysO family protein -
  HB763_RS11235 (HB763_11255) - 2411796..2412716 (-) 921 WP_005529189.1 HDOD domain-containing protein -
  HB763_RS11240 (HB763_11260) tfoX 2413087..2413674 (+) 588 WP_005428539.1 TfoX/Sxy family DNA transformation protein Regulator
  HB763_RS11245 (HB763_11265) - 2413889..2414437 (-) 549 WP_010646003.1 hypothetical protein -
  HB763_RS11250 (HB763_11270) - 2414645..2415142 (-) 498 WP_255957971.1 response regulator -
  HB763_RS11255 (HB763_11275) - 2415139..2417079 (-) 1941 WP_255984082.1 ATP-binding protein -
  HB763_RS11260 (HB763_11280) - 2417265..2418527 (+) 1263 WP_255984083.1 DUF945 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22337.57 Da        Isoelectric Point: 6.4656

>NTDB_id=433173 HB763_RS11240 WP_005428539.1 2413087..2413674(+) (tfoX) [Vibrio campbellii strain LJC012]
MDMTDQAFFNYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TELFDSGFAGLDELLQKSINCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=433173 HB763_RS11240 WP_005428539.1 2413087..2413674(+) (tfoX) [Vibrio campbellii strain LJC012]
ATGGACATGACAGACCAAGCTTTTTTTAACTATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTCGGCGGTAT
TGGTTTATTCAGCAACGACGCAATGTTTGCTCTGGTAAGTAACGACTGCTGTTACTTGCGCGGTGGCAATGGCCTCGATG
AAGAGTTTACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACGGTAAATTATTACGATGTA
ACAGAATTGTTTGATTCCGGTTTTGCTGGGTTGGATGAGCTGTTACAAAAATCAATTAATTGTTCTATCAAGGAACGCAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCGAATATGCAGCTAACGCTAGAGCGTATGGTAAAGAAAG
CGGGTATTGATGACGTAGACACGTTTTTGGAGCTTGGCCCAGTAGAAGTCTTCAACAAAGTAAGAGTGGCATACGGCAGT
GATGTAGACGTTAAGCTGCTTTGGAAGTTTGCTGGTGCGATTGATGGTATCCATTGGAAACTGATCCAAGAACCACGCAA
GAAGCAGCTATTGGCTATGTGTGAATAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(11-99)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

100

100

1
  tfoX Vibrio parahaemolyticus RIMD 2210633

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

59.162

97.949

0.579