Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB762_RS15040 Genome accession   NZ_CP050470
Coordinates   3179364..3179903 (+) Length   179 a.a.
NCBI ID   WP_010648159.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3174364..3184903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS15025 (HB762_14930) uvrA 3174430..3177252 (-) 2823 WP_255899083.1 excinuclease ABC subunit UvrA -
  HB762_RS15030 (HB762_14935) galU 3177390..3178262 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB762_RS15035 (HB762_14940) qstR 3178426..3179070 (-) 645 WP_255899084.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB762_RS15040 (HB762_14945) ssb 3179364..3179903 (+) 540 WP_010648159.1 single-stranded DNA-binding protein Machinery gene
  HB762_RS15045 (HB762_14950) csrD 3180151..3182160 (+) 2010 WP_255899086.1 RNase E specificity factor CsrD -
  HB762_RS15050 (HB762_14955) - 3182172..3183620 (+) 1449 WP_255899088.1 MSHA biogenesis protein MshI -
  HB762_RS15055 (HB762_14960) gspM 3183617..3184267 (+) 651 WP_255899090.1 type II secretion system protein GspM -
  HB762_RS15060 (HB762_14965) - 3184260..3184589 (+) 330 WP_005533781.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9269

>NTDB_id=433116 HB762_RS15040 WP_010648159.1 3179364..3179903(+) (ssb) [Vibrio campbellii strain LJC013]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=433116 HB762_RS15040 WP_010648159.1 3179364..3179903(+) (ssb) [Vibrio campbellii strain LJC013]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAGC
AACAAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAG
CAACCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.804
  ssb Glaesserella parasuis strain SC1401

56.25

100

0.603
  ssb Neisseria meningitidis MC58

48.066

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.48