Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HB761_RS01455 Genome accession   NZ_CP050467
Coordinates   317129..317716 (-) Length   195 a.a.
NCBI ID   WP_255936892.1    Uniprot ID   A0AAE9MV39
Organism   Vibrio campbellii strain LJC014     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 312129..322716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS01435 (HB761_01425) - 312276..313538 (-) 1263 WP_255936882.1 DUF945 family protein -
  HB761_RS01440 (HB761_01430) - 313724..315664 (+) 1941 WP_255936885.1 ATP-binding protein -
  HB761_RS01445 (HB761_01435) - 315661..316158 (+) 498 WP_005529183.1 response regulator -
  HB761_RS01450 (HB761_01440) - 316366..316914 (+) 549 WP_010646003.1 hypothetical protein -
  HB761_RS01455 (HB761_01445) tfoX 317129..317716 (-) 588 WP_255936892.1 TfoX/Sxy family DNA transformation protein Regulator
  HB761_RS01460 (HB761_01450) - 318087..319007 (+) 921 WP_255936894.1 HDOD domain-containing protein -
  HB761_RS01465 (HB761_01455) - 319112..320017 (+) 906 WP_255940741.1 lysine exporter LysO family protein -
  HB761_RS01470 (HB761_01460) - 320227..320739 (+) 513 WP_038891356.1 hypothetical protein -
  HB761_RS01475 (HB761_01465) panP 320861..322507 (+) 1647 WP_255936900.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22351.64 Da        Isoelectric Point: 7.0621

>NTDB_id=433036 HB761_RS01455 WP_255936892.1 317129..317716(-) (tfoX) [Vibrio campbellii strain LJC014]
MDMTDQAFFKYVSNFSEYQKRSMFGGIGLFSNDAMFALVSNDCCYLRGGNGLDEEFTQLNCEKYKHVKKQTTATVNYYDV
TELFDSGFAGLDELLQKSINCSIKERKYQKSSASRRLRDLPNMQLTLERMVKKAGIDDVDTFLELGPVEVFNKVRVAYGS
DVDVKLLWKFAGAIDGIHWKLIQEPRKKQLLAMCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=433036 HB761_RS01455 WP_255936892.1 317129..317716(-) (tfoX) [Vibrio campbellii strain LJC014]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTAAGCAATTTTAGTGAGTACCAAAAACGTTCAATGTTCGGCGGTAT
TGGTTTATTCAGCAACGACGCAATGTTTGCTCTGGTAAGTAACGACTGCTGTTACTTGCGCGGTGGCAATGGCCTCGATG
AAGAGTTTACTCAACTAAACTGTGAAAAATATAAGCACGTCAAAAAACAAACGACGGCAACGGTAAATTACTACGATGTA
ACAGAATTGTTTGATTCCGGTTTTGCTGGGTTGGATGAGCTGTTACAAAAATCAATTAATTGTTCTATCAAGGAACGCAA
ATACCAAAAGTCTTCAGCCAGTAGACGTTTGCGTGATCTACCGAATATGCAGCTAACGCTAGAGCGTATGGTAAAGAAAG
CGGGTATTGATGACGTAGACACGTTTTTGGAGCTTGGCCCAGTAGAAGTCTTCAACAAAGTAAGAGTGGCATACGGCAGT
GATGTAGACGTTAAGCTGCTTTGGAAGTTTGCTGGTGCGATTGATGGTATCCATTGGAAACTGATCCAAGAACCACGCAA
GAAGCAGCTACTGGCTATGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-99)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio campbellii strain DS40M4

99.487

100

0.995
  tfoX Vibrio parahaemolyticus RIMD 2210633

92.308

100

0.923
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

69.43

98.974

0.687
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

69.43

98.974

0.687
  tfoX Vibrio cholerae strain A1552

69.43

98.974

0.687
  tfoX Aliivibrio fischeri ES114

58.639

97.949

0.574