Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   HCC49_RS16645 Genome accession   NZ_CP050462
Coordinates   3363431..3364120 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Htq6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3358431..3369120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS16610 (HCC49_16610) - 3358629..3359111 (-) 483 WP_071392362.1 flagellar protein FlgN -
  HCC49_RS16615 (HCC49_16615) flgM 3359126..3359392 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HCC49_RS16620 (HCC49_16620) - 3359462..3359881 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  HCC49_RS16625 (HCC49_16625) comFC 3359955..3360644 (-) 690 WP_210160282.1 ComF family protein Machinery gene
  HCC49_RS16630 (HCC49_16630) - 3360650..3360934 (-) 285 WP_017418816.1 competence protein ComFB -
  HCC49_RS16635 (HCC49_16635) comFA 3360992..3362377 (-) 1386 WP_167860473.1 DEAD/DEAH box helicase Machinery gene
  HCC49_RS16640 (HCC49_16640) - 3362485..3363333 (-) 849 WP_003151387.1 DegV family protein -
  HCC49_RS16645 (HCC49_16645) degU 3363431..3364120 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HCC49_RS16650 (HCC49_16650) degS 3364197..3365360 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HCC49_RS16655 (HCC49_16655) - 3365583..3366230 (+) 648 WP_060657503.1 YigZ family protein -
  HCC49_RS16660 (HCC49_16660) - 3366235..3367410 (+) 1176 WP_146275636.1 LCP family protein -
  HCC49_RS16665 (HCC49_16665) - 3367500..3368576 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=432982 HCC49_RS16645 WP_003219701.1 3363431..3364120(-) (degU) [Bacillus velezensis strain Htq6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=432982 HCC49_RS16645 WP_003219701.1 3363431..3364120(-) (degU) [Bacillus velezensis strain Htq6]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1