Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   HCC49_RS16625 Genome accession   NZ_CP050462
Coordinates   3359955..3360644 (-) Length   229 a.a.
NCBI ID   WP_210160282.1    Uniprot ID   -
Organism   Bacillus velezensis strain Htq6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3354955..3365644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS16590 (HCC49_16590) fliW 3355046..3355477 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  HCC49_RS16595 (HCC49_16595) - 3355507..3356076 (-) 570 WP_146284023.1 DUF6470 family protein -
  HCC49_RS16600 (HCC49_16600) flgL 3356167..3357084 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HCC49_RS16605 (HCC49_16605) flgK 3357096..3358613 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  HCC49_RS16610 (HCC49_16610) - 3358629..3359111 (-) 483 WP_071392362.1 flagellar protein FlgN -
  HCC49_RS16615 (HCC49_16615) flgM 3359126..3359392 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HCC49_RS16620 (HCC49_16620) - 3359462..3359881 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  HCC49_RS16625 (HCC49_16625) comFC 3359955..3360644 (-) 690 WP_210160282.1 ComF family protein Machinery gene
  HCC49_RS16630 (HCC49_16630) - 3360650..3360934 (-) 285 WP_017418816.1 competence protein ComFB -
  HCC49_RS16635 (HCC49_16635) comFA 3360992..3362377 (-) 1386 WP_167860473.1 DEAD/DEAH box helicase Machinery gene
  HCC49_RS16640 (HCC49_16640) - 3362485..3363333 (-) 849 WP_003151387.1 DegV family protein -
  HCC49_RS16645 (HCC49_16645) degU 3363431..3364120 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HCC49_RS16650 (HCC49_16650) degS 3364197..3365360 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25348.01 Da        Isoelectric Point: 8.2927

>NTDB_id=432980 HCC49_RS16625 WP_210160282.1 3359955..3360644(-) (comFC) [Bacillus velezensis strain Htq6]
MNCLLCDSPISSSLTWRSLFSLTPEQEVCSLCSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=432980 HCC49_RS16625 WP_210160282.1 3359955..3360644(-) (comFC) [Bacillus velezensis strain Htq6]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGACGCCCGAGCAAGA
GGTATGCAGCTTATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603