Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   HCC49_RS16635 Genome accession   NZ_CP050462
Coordinates   3360992..3362377 (-) Length   461 a.a.
NCBI ID   WP_167860473.1    Uniprot ID   -
Organism   Bacillus velezensis strain Htq6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3355992..3367377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCC49_RS16600 (HCC49_16600) flgL 3356167..3357084 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  HCC49_RS16605 (HCC49_16605) flgK 3357096..3358613 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  HCC49_RS16610 (HCC49_16610) - 3358629..3359111 (-) 483 WP_071392362.1 flagellar protein FlgN -
  HCC49_RS16615 (HCC49_16615) flgM 3359126..3359392 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  HCC49_RS16620 (HCC49_16620) - 3359462..3359881 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  HCC49_RS16625 (HCC49_16625) comFC 3359955..3360644 (-) 690 WP_210160282.1 ComF family protein Machinery gene
  HCC49_RS16630 (HCC49_16630) - 3360650..3360934 (-) 285 WP_017418816.1 competence protein ComFB -
  HCC49_RS16635 (HCC49_16635) comFA 3360992..3362377 (-) 1386 WP_167860473.1 DEAD/DEAH box helicase Machinery gene
  HCC49_RS16640 (HCC49_16640) - 3362485..3363333 (-) 849 WP_003151387.1 DegV family protein -
  HCC49_RS16645 (HCC49_16645) degU 3363431..3364120 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  HCC49_RS16650 (HCC49_16650) degS 3364197..3365360 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  HCC49_RS16655 (HCC49_16655) - 3365583..3366230 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52628.06 Da        Isoelectric Point: 10.0531

>NTDB_id=432981 HCC49_RS16635 WP_167860473.1 3360992..3362377(-) (comFA) [Bacillus velezensis strain Htq6]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYFWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGSSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DEILRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGLLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=432981 HCC49_RS16635 WP_167860473.1 3360992..3362377(-) (comFA) [Bacillus velezensis strain Htq6]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAATCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTTTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCAGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCATCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGATATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCTGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.174

99.783

0.62
  comFA Latilactobacillus sakei subsp. sakei 23K

39.48

91.757

0.362