Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   SCIM_RS02245 Genome accession   NC_018073
Coordinates   450989..451654 (+) Length   221 a.a.
NCBI ID   WP_003078227.1    Uniprot ID   -
Organism   Streptococcus intermedius JTH08     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445989..456654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCIM_RS02230 (SCIM_0390) cysK 447971..448900 (-) 930 WP_004234070.1 cysteine synthase A -
  SCIM_RS02235 (SCIM_0391) - 448999..449634 (-) 636 WP_003073631.1 YigZ family protein -
  SCIM_RS02240 (SCIM_0392) comFA/cflA 449691..450992 (+) 1302 WP_003078363.1 DEAD/DEAH box helicase Machinery gene
  SCIM_RS02245 (SCIM_0393) comFC/cflB 450989..451654 (+) 666 WP_003078227.1 ComF family protein Machinery gene
  SCIM_RS02250 (SCIM_0394) hpf 451733..452275 (+) 543 WP_003073626.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  SCIM_RS02255 (SCIM_0395) rsmD 452474..453013 (+) 540 WP_003078233.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SCIM_RS02260 (SCIM_0396) coaD 453003..453500 (+) 498 WP_003078294.1 pantetheine-phosphate adenylyltransferase -
  SCIM_RS02265 (SCIM_0397) sepM 453481..454536 (+) 1056 WP_003078259.1 SepM family pheromone-processing serine protease Regulator
  SCIM_RS02270 (SCIM_0398) - 454817..455380 (+) 564 WP_004234076.1 YutD family protein -
  SCIM_RS02275 (SCIM_0399) rlmN 455414..456496 (+) 1083 WP_003078352.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25392.34 Da        Isoelectric Point: 7.6869

>NTDB_id=43290 SCIM_RS02245 WP_003078227.1 450989..451654(+) (comFC/cflB) [Streptococcus intermedius JTH08]
MNVCVLCDNSLGEKLTFCDLLSLTKPKIRACDACFDKFQRISEQHCPKCYRDGTSEICVDCQVWLEKGKEVSHKSCFVYN
EAMKDFFSQYKFQGDYALYSVFTEILQKELKAYSDYTLVPIPVSSEKYQKRGFNQVTALLEGTKLPFREILEKYDTIAQS
SKTRKERLQSQQCFKLKDSVQPPTKVLLLDDIYTTGSTLQLAKEILVEAGVKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=43290 SCIM_RS02245 WP_003078227.1 450989..451654(+) (comFC/cflB) [Streptococcus intermedius JTH08]
ATGAATGTATGTGTTTTATGTGACAATTCTCTTGGCGAAAAACTGACATTTTGTGATTTATTGTCCTTGACTAAGCCAAA
AATAAGGGCTTGTGATGCCTGCTTTGACAAATTTCAGCGTATTTCAGAGCAGCATTGTCCTAAGTGTTATCGGGATGGAA
CAAGTGAAATCTGTGTAGATTGCCAAGTATGGCTGGAAAAAGGAAAAGAAGTTTCTCATAAAAGTTGTTTTGTTTATAAT
GAAGCTATGAAAGACTTCTTTAGTCAATATAAATTTCAAGGAGATTATGCTCTTTATTCTGTATTTACAGAGATTTTGCA
AAAAGAATTAAAAGCCTATAGCGATTATACACTTGTTCCTATTCCTGTAAGTAGTGAAAAGTACCAGAAGCGAGGCTTCA
ACCAAGTAACAGCTCTCCTTGAGGGGACAAAGTTGCCGTTTAGAGAAATTTTAGAAAAGTATGATACGATTGCTCAATCA
AGTAAGACAAGAAAGGAGCGTTTGCAAAGTCAGCAGTGTTTTAAACTGAAAGACAGTGTTCAGCCTCCGACAAAAGTTCT
TTTGCTAGATGACATTTATACGACTGGCTCAACCCTACAGTTAGCAAAGGAAATTTTAGTGGAAGCGGGAGTGAAAGAAA
TTATGACATTTTCATTGGCAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis SK321

48.165

98.643

0.475
  comFC/cflB Streptococcus pneumoniae TIGR4

47.248

98.643

0.466
  comFC/cflB Streptococcus mitis NCTC 12261

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae D39

46.789

98.643

0.462
  comFC/cflB Streptococcus pneumoniae R6

46.789

98.643

0.462