Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G4G31_RS04975 Genome accession   NZ_CP050451
Coordinates   1062765..1063265 (+) Length   166 a.a.
NCBI ID   WP_182990547.1    Uniprot ID   A0A7G5Z9Q5
Organism   Massilia sp. Se16.2.3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1057765..1068265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G31_RS04965 (G4G31_04970) - 1058246..1059271 (+) 1026 WP_182991678.1 MerR family transcriptional regulator -
  G4G31_RS04970 (G4G31_04975) uvrA 1059335..1062184 (-) 2850 WP_182990546.1 excinuclease ABC subunit UvrA -
  G4G31_RS04975 (G4G31_04980) ssb 1062765..1063265 (+) 501 WP_182990547.1 single-stranded DNA-binding protein Machinery gene
  G4G31_RS04980 (G4G31_04985) - 1063384..1063590 (-) 207 WP_182990548.1 hypothetical protein -
  G4G31_RS04985 (G4G31_04990) - 1063690..1063986 (-) 297 WP_182990549.1 DUF1428 domain-containing protein -
  G4G31_RS04990 (G4G31_04995) - 1064160..1064708 (-) 549 WP_182990550.1 glutathione peroxidase -
  G4G31_RS04995 (G4G31_05000) - 1064939..1066645 (+) 1707 WP_182990551.1 ATP-binding protein -
  G4G31_RS05000 (G4G31_05005) - 1066648..1067295 (+) 648 WP_182990552.1 hypothetical protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18150.39 Da        Isoelectric Point: 5.9417

>NTDB_id=432829 G4G31_RS04975 WP_182990547.1 1062765..1063265(+) (ssb) [Massilia sp. Se16.2.3]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSFKSKDKNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGIERYATDIIAENMQMLGGRQGMGGGNDMGMDDGGGYDAPPQRSAPRQAPPAPAARPQPQRPAPNFSDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=432829 G4G31_RS04975 WP_182990547.1 1062765..1063265(+) (ssb) [Massilia sp. Se16.2.3]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAACCTCGGCCGCGATCCGGAAATCCGCTACATGCCGAGCGGCGACGC
CATCGCGAACATCGCGGTCGCTACCTCGTTCAAGTCGAAGGACAAGAACACCGGCGAGCAGAAAGAGCTGACCGAATGGC
ACCGCATCTCCTTCTTCGGCCGTCTCGCTGAAATCGTCGGCCAGTACCTCAAAAAAGGTTCGTCGGTCTACGTCGAAGGC
CGCCTGCAGACCCGCAAGTACACGGATAAAGACGGCATCGAGCGTTACGCTACCGACATCATCGCCGAGAACATGCAGAT
GCTGGGCGGCCGCCAGGGCATGGGCGGCGGCAACGACATGGGCATGGACGACGGCGGCGGCTACGACGCGCCGCCACAGC
GTTCTGCCCCGCGCCAGGCCCCGCCGGCCCCGGCAGCCCGTCCGCAGCCACAGCGTCCGGCACCGAACTTCTCGGACATG
GACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G5Z9Q5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.913

100

0.572
  ssb Neisseria gonorrhoeae MS11

53.409

100

0.566
  ssb Neisseria meningitidis MC58

51.685

100

0.554
  ssb Glaesserella parasuis strain SC1401

49.727

100

0.548