Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HCG50_RS12335 Genome accession   NZ_CP050447
Coordinates   2622667..2623200 (-) Length   177 a.a.
NCBI ID   WP_025304438.1    Uniprot ID   -
Organism   Serratia marcescens strain SER00094     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2617667..2628200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCG50_RS12300 (HCG50_12300) - 2618009..2618416 (-) 408 WP_025304432.1 VOC family protein -
  HCG50_RS12305 (HCG50_12305) - 2618464..2619132 (-) 669 WP_025304433.1 glutathione S-transferase -
  HCG50_RS12310 (HCG50_12310) - 2619129..2619572 (-) 444 WP_025304434.1 lipocalin-like domain-containing protein -
  HCG50_RS12315 (HCG50_12315) - 2619768..2620028 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  HCG50_RS12320 (HCG50_12320) - 2620178..2620927 (+) 750 WP_127146306.1 3-oxoacyl-ACP reductase family protein -
  HCG50_RS12325 (HCG50_12325) - 2621191..2621403 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  HCG50_RS12330 (HCG50_12330) - 2621625..2622581 (+) 957 WP_025304437.1 cyclase family protein -
  HCG50_RS12335 (HCG50_12335) ssb 2622667..2623200 (-) 534 WP_025304438.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HCG50_RS12340 (HCG50_12340) uvrA 2623478..2626306 (+) 2829 WP_167324651.1 excinuclease ABC subunit UvrA -
  HCG50_RS12345 (HCG50_12345) - 2626536..2627588 (+) 1053 WP_043139692.1 NAD(P)-dependent alcohol dehydrogenase -
  HCG50_RS12350 (HCG50_12350) maa 2627620..2628177 (-) 558 WP_025304441.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18754.70 Da        Isoelectric Point: 5.2456

>NTDB_id=432726 HCG50_RS12335 WP_025304438.1 2622667..2623200(-) (ssb) [Serratia marcescens strain SER00094]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQSSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=432726 HCG50_RS12335 WP_025304438.1 2622667..2623200(-) (ssb) [Serratia marcescens strain SER00094]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACGCGTAAATGGACCGATCAGTCCGGCGTGGAAAAATACACCACCGAAGTGGTGGTTAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAGCAGCGCTCCG
GCGGCCAGCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.176

100

0.763
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.599
  ssb Neisseria meningitidis MC58

46.524

100

0.492
  ssb Neisseria gonorrhoeae MS11

46.524

100

0.492