Detailed information NTG0043271

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SCIM_RS00395
• Genome accession: NC_018073
• Coordinates: 71075..72073 (+)
• Length: 332 a.a.
• NCBI ID: WP_014829554.1
• Uniprot ID: -
• Organism: Streptococcus intermedius JTH08
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 66075..77073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCIM_RS00375 (SCIM_0050)	-	66534..67703 (+)	1170	WP_014829553.1	SIS domain-containing protein	-
SCIM_RS00380 (SCIM_0051)	lacD	67714..68715 (+)	1002	WP_003077572.1	tagatose-bisphosphate aldolase	-
SCIM_RS00385 (SCIM_0052)	-	68758..69804 (+)	1047	WP_003077690.1	aldose epimerase family protein	-
SCIM_RS00390 (SCIM_0053)	-	69899..70666 (-)	768	WP_003077775.1	N-acetylmuramoyl-L-alanine amidase family protein	-
SCIM_RS00395 (SCIM_0054)	ruvB	71075..72073 (+)	999	WP_014829554.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SCIM_RS00400 (SCIM_0055)	-	72079..72645 (+)	567	WP_003077601.1	nucleotidyltransferase family protein	-
SCIM_RS00405 (SCIM_0056)	-	72977..75424 (+)	2448	WP_003077846.1	Sgo0707 family adhesin	-
SCIM_RS00410 (SCIM_0057)	-	75478..76941 (+)	1464	WP_003077620.1	SpaH/EbpB family LPXTG-anchored major pilin	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37511.89 Da
• Isoelectric Point: 4.4340

>NTDB_id=43271 SCIM_RS00395 WP_014829554.1 71075..72073(+) (ruvB) [Streptococcus intermedius JTH08]
MNRMLDNELMGDEELVERTLRPQYLQEYIGQNKVKNQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPVIEKSGDLVAILNDLEPGDVLFIDEIHRLPMSVEEVLYSAMEDFYIDIMIGSGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYEETDLTEIVERTAEIFEMEITHEAAEELALRSRGTPRIANRLLKRVRDFAQIMGNGLID
NRITDQALTMLDVDQEGLDYVDQKILKTMIEVYGGGPVGLGTLSVNIAEEQETVEDMYEPYLIQKGFVMRTRTGRVATRK
AYEHLGYEYLEK

Nucleotide

• Length: 999 bp

>NTDB_id=43271 SCIM_RS00395 WP_014829554.1 71075..72073(+) (ruvB) [Streptococcus intermedius JTH08]
ATGAATAGAATGTTAGATAATGAATTGATGGGAGACGAAGAGCTCGTTGAGCGGACATTGCGTCCCCAGTACTTACAAGA
ATATATAGGCCAAAATAAGGTTAAAAATCAACTGAAGATTTTTATTGAGGCAGCCAAGTTGCGAGATGAGGCATTAGATC
ATACCCTACTTTTCGGACCTCCGGGATTGGGTAAAACGACGATGGCTTTTGTGATCGCCAATGAGCTAGGAGTCAATCTC
AAACAGACTTCGGGGCCTGTGATTGAGAAATCGGGCGATTTGGTAGCGATCTTGAATGATCTGGAGCCAGGAGATGTCCT
TTTTATTGATGAAATTCATCGCTTACCCATGTCTGTTGAAGAAGTGCTTTACAGTGCTATGGAAGATTTTTACATTGATA
TTATGATCGGTTCTGGTGAAACCAGTCGCAGTGTTCATTTGGATTTACCACCTTTTACTTTGATTGGGGCAACGACCCGA
GCTGGTATGTTGTCAAATCCCTTGCGGGCTCGCTTTGGTATTACTGGACATATGGAATACTATGAAGAGACGGATTTGAC
CGAGATTGTAGAGCGAACGGCCGAAATCTTTGAGATGGAGATTACACATGAAGCGGCTGAGGAGTTGGCTTTACGTAGCA
GAGGAACCCCTCGAATTGCCAATCGGCTTCTCAAACGCGTACGAGATTTTGCTCAAATCATGGGGAACGGGTTGATTGAT
AATCGGATTACCGATCAAGCCCTGACGATGCTTGATGTGGATCAAGAAGGCTTAGACTATGTGGATCAGAAGATTCTTAA
AACCATGATTGAGGTGTATGGAGGCGGACCTGTTGGTTTAGGAACCTTGTCTGTCAATATTGCAGAAGAGCAAGAAACGG
TGGAAGATATGTATGAGCCATACTTGATTCAGAAAGGCTTTGTTATGCGAACTCGAACAGGCCGTGTAGCAACGCGTAAA
GCTTATGAGCATTTGGGTTATGAATATTTAGAAAAGTAG

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	90.663	100	0.907
ruvB	Streptococcus pneumoniae R6	90.361	100	0.904
ruvB	Streptococcus pneumoniae D39	90.361	100	0.904
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.509	98.193	0.584
ruvB	Helicobacter pylori 26695	51.393	97.289	0.5
ruvB	Synechocystis sp. PCC 6803	50.645	93.373	0.473