Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GU3_RS04200 Genome accession   NC_016745
Coordinates   889602..890189 (+) Length   195 a.a.
NCBI ID   WP_014291306.1    Uniprot ID   H2FYH8
Organism   Oceanimonas sp. GK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 884602..895189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GU3_RS04190 (GU3_04060) uvrA 885236..888064 (-) 2829 WP_014291304.1 excinuclease ABC subunit UvrA -
  GU3_RS04195 (GU3_04065) - 888214..889587 (+) 1374 WP_014291305.1 MFS transporter -
  GU3_RS04200 (GU3_04070) ssb 889602..890189 (+) 588 WP_014291306.1 single-stranded DNA-binding protein Machinery gene
  GU3_RS04205 (GU3_04075) - 890356..892269 (+) 1914 WP_014291307.1 EAL domain-containing protein -
  GU3_RS04210 (GU3_04080) - 892394..893305 (-) 912 WP_148265848.1 pyridoxal-phosphate dependent enzyme -
  GU3_RS04215 (GU3_04085) - 893479..894522 (+) 1044 WP_014291309.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21517.48 Da        Isoelectric Point: 5.7722

>NTDB_id=43268 GU3_RS04200 WP_014291306.1 889602..890189(+) (ssb) [Oceanimonas sp. GK1]
MANRGINKVILIGHLGQDPEVRYMPNGNAVANITLATSETWRDKQSGEQRERTEWHRVVFFGKLAEIAGEYLRKGSQVYV
EGRLQTRKWQDQGGQDRYTTEVVVDQGGTMQMLGGRPQGGGQQQGGWNQGQQGGGQQGNWGQQQGGSQYGQQGGQPQYGN
PSQGQPQSQPQPASKPQSQPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=43268 GU3_RS04200 WP_014291306.1 889602..890189(+) (ssb) [Oceanimonas sp. GK1]
ATGGCCAATAGAGGCATCAACAAAGTCATCCTGATCGGGCATCTGGGTCAGGATCCCGAAGTGCGCTATATGCCTAACGG
CAACGCCGTCGCCAACATCACCCTGGCCACCAGCGAAACCTGGCGGGACAAGCAGAGTGGCGAGCAGCGTGAGCGCACCG
AATGGCACCGGGTGGTGTTTTTCGGCAAGCTGGCCGAAATTGCCGGCGAATACCTGCGCAAGGGCTCGCAGGTGTATGTG
GAAGGCCGGCTGCAAACCCGCAAGTGGCAGGATCAGGGCGGCCAGGATCGCTATACCACCGAGGTGGTAGTGGATCAGGG
CGGCACCATGCAGATGCTGGGCGGTCGTCCTCAGGGTGGTGGCCAGCAGCAGGGCGGCTGGAATCAGGGCCAGCAGGGCG
GTGGCCAGCAGGGCAACTGGGGTCAGCAGCAGGGCGGCAGCCAGTACGGCCAGCAGGGTGGCCAGCCCCAGTATGGCAAC
CCGTCTCAGGGGCAGCCTCAGAGCCAGCCGCAGCCGGCGTCCAAACCCCAGAGCCAGCCGGTGTACAACGAGCCGCCGAT
GGACTTTGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H2FYH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

66.332

100

0.677
  ssb Glaesserella parasuis strain SC1401

54.639

99.487

0.544
  ssb Neisseria meningitidis MC58

47.668

98.974

0.472
  ssb Neisseria gonorrhoeae MS11

47.668

98.974

0.472

Multiple sequence alignment