Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HPL003_RS07220 Genome accession   NC_016641
Coordinates   1581625..1582116 (-) Length   163 a.a.
NCBI ID   WP_014278988.1    Uniprot ID   G7VUR8
Organism   Paenibacillus terrae HPL-003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1576625..1587116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPL003_RS07200 (HPL003_07370) opp4C 1577092..1578015 (-) 924 WP_014278985.1 oligopeptide ABC transporter permease -
  HPL003_RS07205 (HPL003_07375) - 1578027..1578989 (-) 963 WP_014278986.1 ABC transporter permease -
  HPL003_RS07210 (HPL003_07380) - 1579061..1580794 (-) 1734 WP_014278987.1 ABC transporter substrate-binding protein -
  HPL003_RS07215 (HPL003_07385) rpsR 1581331..1581603 (-) 273 WP_013312800.1 30S ribosomal protein S18 -
  HPL003_RS07220 (HPL003_07390) ssbA 1581625..1582116 (-) 492 WP_014278988.1 single-stranded DNA-binding protein Machinery gene
  HPL003_RS07225 (HPL003_07395) rpsF 1582166..1582450 (-) 285 WP_014278989.1 30S ribosomal protein S6 -
  HPL003_RS07230 (HPL003_07400) - 1582766..1582960 (+) 195 WP_014278990.1 YjzC family protein -
  HPL003_RS07235 (HPL003_07405) - 1583327..1583644 (+) 318 WP_014278991.1 hypothetical protein -
  HPL003_RS07240 (HPL003_07410) - 1583724..1584089 (-) 366 WP_014278992.1 hypothetical protein -
  HPL003_RS07245 (HPL003_07415) - 1584265..1584495 (+) 231 WP_014278993.1 helix-turn-helix domain-containing protein -
  HPL003_RS07250 (HPL003_07420) - 1584806..1585066 (+) 261 WP_014278994.1 hypothetical protein -
  HPL003_RS07260 (HPL003_07425) - 1585360..1585584 (-) 225 WP_014278995.1 DUF951 domain-containing protein -
  HPL003_RS07265 (HPL003_07430) - 1585574..1586524 (-) 951 WP_014278996.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17861.56 Da        Isoelectric Point: 5.0263

>NTDB_id=43240 HPL003_RS07220 WP_014278988.1 1581625..1582116(-) (ssbA) [Paenibacillus terrae HPL-003]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTSQGGEREADFLPIVTWRQLAETCANYLRKGRLTAVEGRVQVR
NYENNEGKRVYVTEIVADNVRFLESNRDGGNGGGNSGGAAREESPFGGGNSNSGRGNNNSRNNHDPFSDDGKPIDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=43240 HPL003_RS07220 WP_014278988.1 1581625..1582116(-) (ssbA) [Paenibacillus terrae HPL-003]
TTGTTGAACCGTGTCATTCTGATCGGTCGTTTGACCAAAGATCCAGAGCTGCGCTATACACCGTCTGGTGTAGCAGTAAC
CCAGTTCACCCTGGCTGTAGACCGTCCGTTTACGAGTCAAGGCGGCGAACGGGAAGCGGATTTCTTGCCGATCGTAACCT
GGCGTCAGCTTGCTGAAACATGTGCTAACTATCTTCGCAAAGGTCGTTTAACGGCTGTTGAAGGCCGTGTTCAGGTGCGT
AATTATGAGAACAATGAAGGAAAGCGTGTATACGTGACTGAAATTGTAGCTGATAATGTGCGTTTCTTGGAATCTAACCG
CGATGGCGGTAACGGTGGCGGCAATAGCGGTGGAGCTGCGCGTGAGGAGTCTCCTTTCGGAGGCGGCAACAGCAATAGTG
GACGTGGGAATAATAACTCGCGAAACAATCATGATCCTTTTTCCGATGACGGAAAACCGATCGATATTTCGGATGATGAT
CTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7VUR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.382

100

0.62
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.528
  ssb Neisseria meningitidis MC58

35.165

100

0.393
  ssb Neisseria gonorrhoeae MS11

34.078

100

0.374

Multiple sequence alignment