Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HBN34_RS01870 Genome accession   NZ_CP050403
Coordinates   402605..403423 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain VB2486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397605..408423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBN34_RS01835 (HBN34_01835) - 398187..398317 (-) 131 Protein_352 hypothetical protein -
  HBN34_RS01840 (HBN34_01840) rpoZ 398356..398634 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HBN34_RS01845 (HBN34_01845) gmk 398707..399336 (-) 630 WP_000015937.1 guanylate kinase -
  HBN34_RS01850 (HBN34_01850) ispH 399459..400409 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HBN34_RS01855 (HBN34_01855) fimU 400579..401052 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HBN34_RS01860 (HBN34_01860) pilV 401046..401606 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HBN34_RS01865 (HBN34_01865) pilW 401607..402608 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HBN34_RS01870 (HBN34_01870) pilX 402605..403423 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HBN34_RS01875 (HBN34_01875) pilY1 403435..407289 (+) 3855 WP_208564599.1 vWA domain-containing protein Machinery gene
  HBN34_RS01880 (HBN34_01880) pilY2 407300..407782 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  HBN34_RS01885 (HBN34_01885) pilE 407779..408204 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=432300 HBN34_RS01870 WP_000149374.1 402605..403423(+) (pilX) [Acinetobacter baumannii strain VB2486]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=432300 HBN34_RS01870 WP_000149374.1 402605..403423(+) (pilX) [Acinetobacter baumannii strain VB2486]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993