Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HBN34_RS01855 Genome accession   NZ_CP050403
Coordinates   400579..401052 (+) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain VB2486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395579..406052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBN34_RS01830 (HBN34_01830) - 396042..398147 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  HBN34_RS01835 (HBN34_01835) - 398187..398317 (-) 131 Protein_352 hypothetical protein -
  HBN34_RS01840 (HBN34_01840) rpoZ 398356..398634 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HBN34_RS01845 (HBN34_01845) gmk 398707..399336 (-) 630 WP_000015937.1 guanylate kinase -
  HBN34_RS01850 (HBN34_01850) ispH 399459..400409 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HBN34_RS01855 (HBN34_01855) fimU 400579..401052 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HBN34_RS01860 (HBN34_01860) pilV 401046..401606 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HBN34_RS01865 (HBN34_01865) pilW 401607..402608 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HBN34_RS01870 (HBN34_01870) pilX 402605..403423 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=432297 HBN34_RS01855 WP_001214060.1 400579..401052(+) (fimU) [Acinetobacter baumannii strain VB2486]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=432297 HBN34_RS01855 WP_001214060.1 400579..401052(+) (fimU) [Acinetobacter baumannii strain VB2486]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987