Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   HBN34_RS01860 Genome accession   NZ_CP050403
Coordinates   401046..401606 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain VB2486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396046..406606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBN34_RS01835 (HBN34_01835) - 398187..398317 (-) 131 Protein_352 hypothetical protein -
  HBN34_RS01840 (HBN34_01840) rpoZ 398356..398634 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HBN34_RS01845 (HBN34_01845) gmk 398707..399336 (-) 630 WP_000015937.1 guanylate kinase -
  HBN34_RS01850 (HBN34_01850) ispH 399459..400409 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HBN34_RS01855 (HBN34_01855) fimU 400579..401052 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HBN34_RS01860 (HBN34_01860) pilV 401046..401606 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HBN34_RS01865 (HBN34_01865) pilW 401607..402608 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  HBN34_RS01870 (HBN34_01870) pilX 402605..403423 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=432298 HBN34_RS01860 WP_002194578.1 401046..401606(+) (pilV) [Acinetobacter baumannii strain VB2486]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=432298 HBN34_RS01860 WP_002194578.1 401046..401606(+) (pilV) [Acinetobacter baumannii strain VB2486]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGTTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCCTCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414