Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HBN34_RS01880 Genome accession   NZ_CP050403
Coordinates   407300..407782 (+) Length   160 a.a.
NCBI ID   WP_001046489.1    Uniprot ID   A0A0J0ZLV7
Organism   Acinetobacter baumannii strain VB2486     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402300..412782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBN34_RS01870 (HBN34_01870) pilX 402605..403423 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HBN34_RS01875 (HBN34_01875) pilY1 403435..407289 (+) 3855 WP_208564599.1 vWA domain-containing protein Machinery gene
  HBN34_RS01880 (HBN34_01880) pilY2 407300..407782 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  HBN34_RS01885 (HBN34_01885) pilE 407779..408204 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene
  HBN34_RS01890 (HBN34_01890) rpsP 408351..408602 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HBN34_RS01895 (HBN34_01895) rimM 408622..409170 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HBN34_RS01900 (HBN34_01900) trmD 409216..409956 (+) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HBN34_RS01905 (HBN34_01905) rplS 410164..410532 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HBN34_RS01910 (HBN34_01910) - 410584..411525 (-) 942 WP_114673853.1 lipase family alpha/beta hydrolase -
  HBN34_RS01915 (HBN34_01915) - 411640..412671 (-) 1032 WP_001189459.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17657.94 Da        Isoelectric Point: 8.4737

>NTDB_id=432302 HBN34_RS01880 WP_001046489.1 407300..407782(+) (pilY2) [Acinetobacter baumannii strain VB2486]
MNKYYILRFNQGFTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCETNSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=432302 HBN34_RS01880 WP_001046489.1 407300..407782(+) (pilY2) [Acinetobacter baumannii strain VB2486]
ATGAATAAGTACTACATTTTACGGTTCAATCAGGGTTTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAACGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZLV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

96.25

100

0.963
  comE Acinetobacter baylyi ADP1

41.86

100

0.45