Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   Y1U_RS10040 Genome accession   NC_017927
Coordinates   682604..683251 (-) Length   215 a.a.
NCBI ID   WP_014608171.1    Uniprot ID   -
Organism   Streptococcus thermophilus MN-ZLW-002     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 677604..688251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y1U_RS03600 (Y1U_C0688) holA 677934..678968 (+) 1035 WP_014608169.1 DNA polymerase III subunit delta -
  Y1U_RS03605 (Y1U_C0689) sodA 679063..679668 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  Y1U_RS03610 (Y1U_Cp0019) - 679746..680995 (-) 1250 Protein_664 ISL3 family transposase -
  Y1U_RS03615 (Y1U_C0690) - 681184..682563 (+) 1380 WP_014608170.1 serine hydrolase -
  Y1U_RS10040 (Y1U_C0691) cclA/cilC 682604..683251 (-) 648 WP_014608171.1 prepilin peptidase Machinery gene
  Y1U_RS03620 (Y1U_C0692) - 683360..683881 (+) 522 WP_014608172.1 Dps family protein -
  Y1U_RS03625 (Y1U_C0693) - 683970..684407 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  Y1U_RS03630 - 684518..684724 (+) 207 WP_002950395.1 YqgQ family protein -
  Y1U_RS03635 (Y1U_C0695) - 684717..685685 (+) 969 WP_011225772.1 ROK family glucokinase -
  Y1U_RS03640 (Y1U_C0696) typA 685823..687670 (+) 1848 WP_011227074.1 translational GTPase TypA -
  Y1U_RS03645 (Y1U_C0697) - 687694..687966 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24867.98 Da        Isoelectric Point: 8.5469

>NTDB_id=43176 Y1U_RS10040 WP_014608171.1 682604..683251(-) (cclA/cilC) [Streptococcus thermophilus MN-ZLW-002]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLYFYNYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFISVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=43176 Y1U_RS10040 WP_014608171.1 682604..683251(-) (cclA/cilC) [Streptococcus thermophilus MN-ZLW-002]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTATCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTATTTCTATAACTACCTAGATTTTGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATTAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

39.72

99.535

0.395
  cclA/cilC Streptococcus pneumoniae TIGR4

39.72

99.535

0.395
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae D39

38.785

99.535

0.386
  cclA/cilC Streptococcus pneumoniae R6

38.785

99.535

0.386

Multiple sequence alignment