Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   Y1U_RS09270 Genome accession   NC_017927
Coordinates   1764705..1765706 (-) Length   333 a.a.
NCBI ID   WP_002948618.1    Uniprot ID   Q5M2B1
Organism   Streptococcus thermophilus MN-ZLW-002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759705..1770706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y1U_RS09225 (Y1U_C1822) rplP 1759800..1760213 (-) 414 WP_002952157.1 50S ribosomal protein L16 -
  Y1U_RS09230 (Y1U_C1823) rpsC 1760217..1760870 (-) 654 WP_011681716.1 30S ribosomal protein S3 -
  Y1U_RS09235 (Y1U_C1824) rplV 1760883..1761227 (-) 345 WP_002887063.1 50S ribosomal protein L22 -
  Y1U_RS09240 (Y1U_C1825) rpsS 1761243..1761521 (-) 279 WP_002952159.1 30S ribosomal protein S19 -
  Y1U_RS09245 (Y1U_C1826) rplB 1761615..1762448 (-) 834 WP_002952161.1 50S ribosomal protein L2 -
  Y1U_RS09250 (Y1U_C1827) - 1762466..1762762 (-) 297 WP_002887066.1 50S ribosomal protein L23 -
  Y1U_RS09255 (Y1U_C1828) rplD 1762762..1763385 (-) 624 WP_002885795.1 50S ribosomal protein L4 -
  Y1U_RS09260 (Y1U_C1829) rplC 1763410..1764036 (-) 627 WP_011681717.1 50S ribosomal protein L3 -
  Y1U_RS09265 (Y1U_C1830) rpsJ 1764153..1764461 (-) 309 WP_002952168.1 30S ribosomal protein S10 -
  Y1U_RS09270 (Y1U_C1831) ruvB 1764705..1765706 (-) 1002 WP_002948618.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  Y1U_RS09275 (Y1U_C1832) - 1765789..1767612 (-) 1824 WP_011227608.1 acyltransferase family protein -
  Y1U_RS09280 (Y1U_C1833) - 1767609..1768019 (-) 411 WP_002948620.1 membrane protein -
  Y1U_RS09285 (Y1U_C1834) - 1768016..1768450 (-) 435 WP_011681719.1 low molecular weight protein-tyrosine-phosphatase -
  Y1U_RS09290 (Y1U_C1835) - 1768733..1770025 (-) 1293 WP_011681720.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37540.93 Da        Isoelectric Point: 4.4605

>NTDB_id=43171 Y1U_RS09270 WP_002948618.1 1764705..1765706(-) (ruvB) [Streptococcus thermophilus MN-ZLW-002]
MARILDNDLLGDEEYVERTLRPQYFKEYIGQDKVKDQLKIFIEAAKLRDEALDHTLLFGPPGLGKTTMAFVIANEMGVNL
KQTSGPAIEKAGDLVAILNDLEPGDILFIDEIHRMPMAVEEVLYSAMEDYYIDIMIGAGETSRSVHLDLPPFTLVGATTR
AGMLSNPLRARFGINGHMEYYELPDLTEIVERTSEIFEMTITPEAALELARRSRGTPRIANRLLKRVRDYAQIMGDGVID
DKIADQALTMLDVDHEGLDYVDQKILRTMIEMYGGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIMRTRTGRVATAK
AYEHMGYDYTRDN

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=43171 Y1U_RS09270 WP_002948618.1 1764705..1765706(-) (ruvB) [Streptococcus thermophilus MN-ZLW-002]
ATGGCAAGAATATTAGATAATGATTTACTAGGAGATGAGGAGTATGTGGAGCGTACCCTTCGCCCTCAGTACTTTAAGGA
ATATATTGGTCAAGATAAGGTTAAGGACCAATTAAAAATTTTTATAGAAGCAGCTAAACTCCGTGATGAGGCTCTAGACC
ATACCCTTTTGTTTGGCCCACCTGGTTTGGGTAAAACGACTATGGCATTTGTAATCGCCAATGAGATGGGAGTGAATTTG
AAGCAAACATCTGGGCCGGCAATTGAAAAGGCTGGTGATTTAGTTGCCATACTCAATGACTTGGAGCCGGGAGACATCTT
ATTTATTGATGAGATTCATCGTATGCCTATGGCAGTGGAAGAAGTTCTTTATAGCGCTATGGAAGATTACTACATCGATA
TCATGATTGGAGCAGGTGAAACAAGTCGTAGTGTTCATCTAGACCTGCCTCCCTTTACTTTGGTTGGTGCGACCACACGA
GCAGGTATGCTGTCAAATCCCTTGAGAGCTCGCTTTGGAATCAATGGTCATATGGAATATTATGAGTTACCTGATTTGAC
AGAGATTGTAGAACGTACTTCGGAAATCTTTGAAATGACAATAACACCAGAGGCTGCCTTGGAATTAGCACGGCGTAGTC
GTGGAACACCACGTATTGCTAACCGCCTGCTTAAGCGCGTGCGAGACTATGCTCAAATCATGGGTGATGGTGTCATTGAC
GATAAGATTGCAGATCAGGCATTGACTATGCTGGATGTAGATCATGAAGGGTTAGACTACGTTGACCAAAAAATCCTCCG
AACTATGATTGAGATGTATGGGGGAGGCCCAGTTGGCTTAGGTACTTTATCAGTTAATATTGCTGAAGAGCGAGAAACAG
TAGAAGATATGTATGAACCCTACCTAATCCAAAAAGGTTTCATTATGCGTACACGAACAGGACGTGTCGCAACTGCTAAA
GCCTATGAGCATATGGGATATGACTATACTCGAGATAATTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(181-254)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(20-178)

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 7PBL
  PDB 7PBM
  PDB 7PBN
  PDB 7PBO
  PDB 7PBP
  PDB 7PBQ
  PDB 7PBR
  PDB 7PBS
  PDB 7PBT

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

88.182

99.099

0.874
  ruvB Streptococcus pneumoniae R6

87.879

99.099

0.871
  ruvB Streptococcus pneumoniae D39

87.879

99.099

0.871
  ruvB Bacillus subtilis subsp. subtilis str. 168

58.359

98.799

0.577
  ruvB Helicobacter pylori 26695

49.844

96.396

0.48
  ruvB Synechocystis sp. PCC 6803

50.799

93.994

0.477

Multiple sequence alignment