Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IHV08_RS14605 Genome accession   NZ_CP062497
Coordinates   2782712..2783407 (-) Length   231 a.a.
NCBI ID   WP_014480455.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2777712..2788407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS14580 (IHV08_14580) minD 2778648..2779454 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  IHV08_RS14585 (IHV08_14585) minC 2779456..2780136 (-) 681 WP_017696329.1 septum site-determining protein MinC -
  IHV08_RS14590 (IHV08_14590) mreD 2780189..2780707 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  IHV08_RS14595 (IHV08_14595) mreC 2780704..2781576 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  IHV08_RS14600 (IHV08_14600) mreB 2781607..2782620 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  IHV08_RS14605 (IHV08_14605) ysxA/radC 2782712..2783407 (-) 696 WP_014480455.1 DNA repair protein RadC Machinery gene
  IHV08_RS14610 (IHV08_14610) maf 2783444..2784013 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  IHV08_RS14615 (IHV08_14615) spoIIB 2784166..2785164 (-) 999 WP_181217306.1 stage II sporulation protein SpoIIB -
  IHV08_RS14620 (IHV08_14620) comC 2785298..2786044 (-) 747 WP_101172351.1 A24 family peptidase Machinery gene
  IHV08_RS14625 (IHV08_14625) folC 2786184..2787476 (-) 1293 WP_181217307.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26128.44 Da        Isoelectric Point: 7.9285

>NTDB_id=431469 IHV08_RS14605 WP_014480455.1 2782712..2783407(-) (ysxA/radC) [Bacillus subtilis strain CV16]
MVIHDLPLKLKDFPIKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=431469 IHV08_RS14605 WP_014480455.1 2782712..2783407(-) (ysxA/radC) [Bacillus subtilis strain CV16]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATCAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGAATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424