Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DSUI_RS17055 Genome accession   NC_016616
Coordinates   3742770..3743264 (-) Length   164 a.a.
NCBI ID   WP_014238487.1    Uniprot ID   -
Organism   Azospira oryzae PS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3737770..3748264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSUI_RS17035 (Dsui_3475) - 3738130..3740301 (+) 2172 WP_014238483.1 HAMP domain-containing methyl-accepting chemotaxis protein -
  DSUI_RS17040 (Dsui_3476) - 3740313..3740831 (+) 519 WP_014238484.1 chemotaxis protein CheW -
  DSUI_RS17045 (Dsui_3477) - 3740847..3742106 (+) 1260 WP_014238485.1 two-component system sensor histidine kinase NtrB -
  DSUI_RS17050 (Dsui_3478) - 3742305..3742664 (+) 360 WP_157870671.1 hypothetical protein -
  DSUI_RS17055 (Dsui_3479) ssb 3742770..3743264 (-) 495 WP_014238487.1 single-stranded DNA-binding protein Machinery gene
  DSUI_RS17060 (Dsui_3480) - 3743297..3744475 (-) 1179 WP_043799797.1 MFS transporter -
  DSUI_RS17065 (Dsui_3481) aspA 3744812..3746230 (+) 1419 WP_014238489.1 aspartate ammonia-lyase -
  DSUI_RS17070 (Dsui_3482) - 3746322..3747635 (+) 1314 WP_014238490.1 dicarboxylate/amino acid:cation symporter -
  DSUI_RS19780 (Dsui_3483) - 3747656..3748001 (+) 346 Protein_3465 GlpM family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17755.70 Da        Isoelectric Point: 5.9731

>NTDB_id=43142 DSUI_RS17055 WP_014238487.1 3742770..3743264(-) (ssb) [Azospira oryzae PS]
MAAVNKVILLGNLGADPETRYMPNGDAVATVRLATTETWKDRNSGEKREATEWHRVVFFRKLAEIVGQYLKKGSSVYIEG
RIRTRKWQDKDGQERYTTEIEATEMQMLGGRGGQGGQGGGSGASYGGGDDFGGGDFSPRSSAPAASAPKKKAPSFDDMDD
DIPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=43142 DSUI_RS17055 WP_014238487.1 3742770..3743264(-) (ssb) [Azospira oryzae PS]
ATGGCTGCAGTCAATAAAGTGATTCTTTTGGGCAATCTGGGGGCCGATCCGGAAACCCGTTACATGCCCAACGGTGACGC
TGTGGCCACTGTCCGCCTGGCTACCACCGAAACCTGGAAGGACCGCAATTCCGGCGAGAAGCGTGAAGCCACCGAATGGC
ACCGGGTGGTGTTCTTCCGCAAGCTGGCAGAGATCGTCGGCCAGTACCTGAAGAAGGGTTCTTCCGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACAAGGACGGCCAGGAACGCTACACCACCGAAATCGAAGCCACCGAAATGCAGAT
GCTCGGCGGCCGTGGCGGCCAGGGCGGCCAAGGTGGCGGCAGCGGTGCCTCCTACGGCGGCGGCGACGACTTCGGTGGCG
GTGATTTCAGCCCCCGTTCCTCCGCTCCCGCTGCCTCTGCGCCGAAGAAGAAGGCCCCGTCTTTCGACGACATGGACGAC
GACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.549

100

0.561
  ssb Vibrio cholerae strain A1552

52.601

100

0.555
  ssb Neisseria meningitidis MC58

50.575

100

0.537
  ssb Neisseria gonorrhoeae MS11

49.143

100

0.524

Multiple sequence alignment