Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HBH39_RS15845 Genome accession   NZ_CP050313
Coordinates   3643098..3643781 (-) Length   227 a.a.
NCBI ID   WP_167679634.1    Uniprot ID   A0A6G9QMZ8
Organism   Shewanella aestuarii strain PN3F2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3638098..3648781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBH39_RS15825 (HBH39_15825) - 3638419..3639099 (+) 681 WP_167679630.1 transglutaminase-like cysteine peptidase -
  HBH39_RS15830 (HBH39_15830) - 3639107..3641029 (+) 1923 WP_167679631.1 EAL domain-containing protein -
  HBH39_RS15835 (HBH39_15835) - 3641093..3641527 (-) 435 WP_167679632.1 hypothetical protein -
  HBH39_RS15840 (HBH39_15840) - 3641911..3642909 (-) 999 WP_167679633.1 NAD(P)H-quinone oxidoreductase -
  HBH39_RS15845 (HBH39_15845) ssb 3643098..3643781 (-) 684 WP_167679634.1 single-stranded DNA-binding protein Machinery gene
  HBH39_RS15850 (HBH39_15850) - 3643835..3645202 (-) 1368 WP_167679635.1 MFS transporter -
  HBH39_RS15855 (HBH39_15855) uvrA 3645415..3648348 (+) 2934 WP_167679636.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25117.60 Da        Isoelectric Point: 5.9427

>NTDB_id=431394 HBH39_RS15845 WP_167679634.1 3643098..3643781(-) (ssb) [Shewanella aestuarii strain PN3F2]
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQVQERTEWHNIVMYRRLAEIAGEYLKKGSKVYLE
GKLQTSKWQDQTTGQDRYKTEINAMEMQMLDSRNSGSGMDNNQGYNQAPAQPRPAPQPRQNAPQQPQQSGQYNQAPAGSY
QQPAGGYGQQSAPQVAPQQTYAPKPQAPQGNFQQAAPQQAPAQRPAPQPAQNFTPDLDEGWDDDIPF

Nucleotide


Download         Length: 684 bp        

>NTDB_id=431394 HBH39_RS15845 WP_167679634.1 3643098..3643781(-) (ssb) [Shewanella aestuarii strain PN3F2]
ATGGCCAGTCGTGGTGTGAATAAAGTCATTTTGGTGGGTAACTTAGGTAAAGATCCTGAGGTACGTTACATGCCAAACGG
TAATGCCGTTGCCAATTTTACTGTAGCGACTAGCGAGTCGTGGAAAGACCAACAAGGTCAAGTACAAGAGCGTACTGAGT
GGCATAACATTGTTATGTATCGTCGTTTAGCTGAAATTGCTGGAGAGTACCTAAAGAAAGGCTCGAAAGTGTATTTAGAA
GGCAAATTGCAAACCAGTAAATGGCAAGACCAAACGACAGGTCAAGACCGTTACAAGACTGAAATTAATGCGATGGAAAT
GCAAATGCTTGATAGCCGTAACAGCGGTTCAGGCATGGATAATAATCAAGGTTATAATCAAGCCCCAGCACAGCCACGCC
CAGCACCACAGCCTCGTCAAAATGCGCCACAACAGCCGCAGCAGTCTGGTCAATATAATCAAGCGCCAGCAGGCAGTTAT
CAGCAGCCAGCAGGTGGTTATGGTCAGCAGTCTGCACCACAAGTGGCGCCACAACAAACTTATGCACCAAAGCCTCAAGC
GCCTCAAGGTAACTTCCAGCAAGCTGCGCCACAGCAAGCTCCTGCTCAGCGCCCTGCACCGCAGCCAGCACAAAACTTTA
CTCCAGATTTAGATGAAGGCTGGGATGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9QMZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.472

100

0.489
  ssb Vibrio cholerae strain A1552

56.725

75.33

0.427
  ssb Neisseria meningitidis MC58

56.098

72.247

0.405
  ssb Neisseria gonorrhoeae MS11

56.522

70.925

0.401