Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB780_RS15630 Genome accession   NZ_CP050308
Coordinates   377154..377714 (+) Length   186 a.a.
NCBI ID   WP_183693284.1    Uniprot ID   -
Organism   Rhizobium lusitanum strain 629     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 372154..382714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB780_RS15620 (HB780_15700) - 373137..373943 (-) 807 WP_183693278.1 DUF72 domain-containing protein -
  HB780_RS15625 (HB780_15705) uvrA 373974..376895 (-) 2922 WP_183693281.1 excinuclease ABC subunit UvrA -
  HB780_RS15630 (HB780_15710) ssb 377154..377714 (+) 561 WP_183693284.1 single-stranded DNA-binding protein Machinery gene
  HB780_RS15635 (HB780_15715) - 377783..378415 (-) 633 WP_183693287.1 MarC family protein -
  HB780_RS15640 (HB780_15720) gyrA 378643..381450 (+) 2808 WP_183693290.1 DNA gyrase subunit A -
  HB780_RS15645 (HB780_15725) - 381574..381933 (-) 360 WP_183693293.1 DoxX family protein -
  HB780_RS15650 (HB780_15730) - 381926..382570 (-) 645 WP_183693296.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 19429.17 Da        Isoelectric Point: 5.3320

>NTDB_id=431346 HB780_RS15630 WP_183693284.1 377154..377714(+) (ssb) [Rhizobium lusitanum strain 629]
MAGSVNKVILIGNLGADPEIRRTQDGRPIANLNIATSETWRDRNSGERKEKTEWHRVVIFNEGLCKVAEQYLKKGAKVYI
EGALQTRKWQDQNGQDKYSTEIVLQGFNSTLTMLDGRGEGGGGGGGGSRGGGGDFGGGDYGGDDYGQPSSPPSGGRSAGA
SRGAPASSGGGAGSNFSRDLDDDIPF

Nucleotide


Download         Length: 561 bp        

>NTDB_id=431346 HB780_RS15630 WP_183693284.1 377154..377714(+) (ssb) [Rhizobium lusitanum strain 629]
ATGGCCGGTAGTGTGAACAAGGTAATTCTGATTGGAAATCTCGGGGCGGACCCGGAAATCCGCCGTACGCAGGATGGCCG
TCCGATCGCCAATCTCAACATTGCGACATCGGAAACCTGGCGCGATCGCAATTCCGGCGAGCGCAAGGAAAAGACCGAAT
GGCACCGTGTGGTGATCTTCAACGAAGGTCTCTGCAAGGTCGCCGAACAGTACCTGAAAAAGGGCGCCAAGGTCTATATC
GAAGGCGCGCTTCAGACCCGCAAGTGGCAGGACCAGAACGGCCAGGATAAGTATTCAACCGAAATCGTGCTGCAGGGCTT
CAATTCGACGCTGACCATGCTGGACGGCCGCGGTGAAGGCGGTGGTGGTGGCGGCGGCGGTAGCCGTGGCGGCGGCGGTG
ATTTTGGTGGCGGTGATTACGGCGGTGACGATTATGGTCAGCCCTCGTCACCACCGTCTGGTGGCCGCAGTGCTGGCGCA
AGCCGTGGCGCTCCCGCAAGCAGCGGCGGCGGTGCGGGCAGCAACTTCTCGCGCGATCTGGACGACGATATCCCGTTTTG
A

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50

97.849

0.489
  ssb Glaesserella parasuis strain SC1401

47.368

100

0.484
  ssb Neisseria meningitidis MC58

40

99.462

0.398
  ssb Neisseria gonorrhoeae MS11

39.459

99.462

0.392