Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB779_RS14495 Genome accession   NZ_CP050301
Coordinates   2627262..2627792 (-) Length   176 a.a.
NCBI ID   WP_188343047.1    Uniprot ID   -
Organism   Phyllobacterium sp. 628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2622262..2632792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB779_RS14470 (HB779_14485) - 2622460..2623755 (-) 1296 WP_188343042.1 NAD(P)/FAD-dependent oxidoreductase -
  HB779_RS14475 (HB779_14490) - 2623807..2624682 (-) 876 WP_188343043.1 AraC family transcriptional regulator -
  HB779_RS14480 (HB779_14495) - 2624720..2625127 (+) 408 WP_188343044.1 DUF2000 family protein -
  HB779_RS14485 (HB779_14500) - 2625132..2625569 (-) 438 WP_188343045.1 YqaA family protein -
  HB779_RS14490 (HB779_14505) - 2625603..2626661 (-) 1059 WP_188343046.1 LacI family DNA-binding transcriptional regulator -
  HB779_RS14495 (HB779_14510) ssb 2627262..2627792 (-) 531 WP_188343047.1 single-stranded DNA-binding protein Machinery gene
  HB779_RS14500 (HB779_14515) uvrA 2628236..2631157 (+) 2922 WP_188343048.1 excinuclease ABC subunit UvrA -
  HB779_RS14505 (HB779_14520) - 2631233..2632033 (+) 801 WP_188343049.1 DUF72 domain-containing protein -
  HB779_RS14510 (HB779_14525) - 2632076..2632267 (-) 192 WP_188343050.1 hypothetical protein -
  HB779_RS14515 (HB779_14530) - 2632285..2632623 (+) 339 WP_008123000.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19184.97 Da        Isoelectric Point: 5.3611

>NTDB_id=431343 HB779_RS14495 WP_188343047.1 2627262..2627792(-) (ssb) [Phyllobacterium sp. 628]
MAGSVNKVILVGNLGKDPEVRKMGSGDPVVSFSIATSESWRDKNSGERKEKTEWHNIVIFNDNLAKVAEQYLKKGMKVYI
EGALQTRKWQDQTGNERYTTEIVLQKFRGELQMLDSRGEGAGSGGGRSFDNSSRGQVSDNGDYGSDFNRGSSSSSSGNSN
AGGGNFSRDLDDEIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=431343 HB779_RS14495 WP_188343047.1 2627262..2627792(-) (ssb) [Phyllobacterium sp. 628]
ATGGCGGGCAGTGTCAACAAGGTGATTTTGGTCGGCAATCTGGGTAAAGATCCGGAAGTTCGGAAAATGGGCTCGGGCGA
TCCCGTCGTCAGTTTCAGTATCGCCACATCGGAAAGCTGGCGCGATAAGAACAGCGGCGAGCGTAAGGAAAAGACCGAGT
GGCACAATATTGTCATTTTCAATGACAACCTCGCCAAGGTTGCTGAACAATATCTGAAAAAAGGCATGAAGGTTTATATC
GAAGGCGCCTTGCAGACCCGCAAGTGGCAGGATCAGACCGGCAACGAGCGTTATACGACAGAAATCGTTCTGCAGAAATT
CCGCGGTGAATTGCAGATGCTGGATTCACGCGGCGAGGGCGCCGGTTCCGGCGGCGGCCGTTCGTTCGACAATTCGAGCC
GTGGTCAGGTTTCGGACAACGGCGATTACGGTTCGGACTTCAACCGTGGCAGTTCATCGTCTTCCTCCGGCAACAGCAAT
GCGGGCGGCGGCAATTTCTCGCGTGATCTCGACGATGAGATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.534
  ssb Vibrio cholerae strain A1552

47.701

98.864

0.472
  ssb Neisseria gonorrhoeae MS11

41.899

100

0.426
  ssb Neisseria meningitidis MC58

41.899

100

0.426