Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB776_RS07105 Genome accession   NZ_CP050292
Coordinates   1525392..1525901 (+) Length   169 a.a.
NCBI ID   WP_092142634.1    Uniprot ID   -
Organism   Tardiphaga robiniae strain 581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1520392..1530901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB776_RS07095 (HB776_07105) - 1523187..1523945 (-) 759 WP_093758685.1 outer membrane protein -
  HB776_RS07100 (HB776_07110) - 1524196..1524927 (-) 732 WP_120289875.1 outer membrane protein -
  HB776_RS07105 (HB776_07115) ssb 1525392..1525901 (+) 510 WP_092142634.1 single-stranded DNA-binding protein Machinery gene
  HB776_RS07110 (HB776_07120) - 1526208..1526414 (+) 207 WP_184516362.1 hypothetical protein -
  HB776_RS07115 (HB776_07125) - 1526529..1527326 (-) 798 WP_184516365.1 class I SAM-dependent methyltransferase -
  HB776_RS07120 (HB776_07130) - 1527555..1528379 (+) 825 WP_244628505.1 sulfate adenylyltransferase -
  HB776_RS07125 (HB776_07135) - 1528839..1529243 (+) 405 WP_089264454.1 DUF2306 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17733.77 Da        Isoelectric Point: 7.0179

>NTDB_id=431325 HB776_RS07105 WP_092142634.1 1525392..1525901(+) (ssb) [Tardiphaga robiniae strain 581]
MAGSVNKVILVGNLGKDPEVRRMQNGNPVVNLTVATSDTWRDKGTGERKEKTEWHRVVIFSEGLAKVAEQYLKKGAKVYI
EGALQTRKWTDPQGVEKYSTEIVLQGFNSTLTMLDGKGGGAGGGGGYGGDDMGDSFGGGQSSAPPQRRVAAPAGGGGGRG
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=431325 HB776_RS07105 WP_092142634.1 1525392..1525901(+) (ssb) [Tardiphaga robiniae strain 581]
ATGGCGGGTAGCGTCAACAAGGTGATTTTGGTCGGCAATCTCGGCAAGGATCCAGAAGTCCGCCGGATGCAGAACGGCAA
TCCGGTCGTCAACCTGACCGTCGCGACCTCGGATACCTGGCGCGACAAGGGCACCGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTCGTGATTTTCAGCGAAGGTCTCGCCAAGGTCGCCGAGCAGTATCTGAAGAAGGGCGCCAAGGTTTATATC
GAAGGCGCGCTGCAGACCCGCAAATGGACTGATCCGCAGGGTGTCGAGAAATACTCCACCGAGATCGTGCTGCAGGGCTT
CAATTCGACGCTGACCATGCTCGACGGCAAGGGCGGCGGCGCGGGTGGTGGCGGCGGTTACGGCGGCGATGACATGGGCG
ACAGCTTCGGCGGCGGCCAGTCGAGCGCTCCGCCGCAGCGCCGCGTGGCCGCACCGGCAGGTGGAGGTGGTGGCCGTGGC
AGCGACATGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.34

100

0.527
  ssb Vibrio cholerae strain A1552

50.867

100

0.521
  ssb Neisseria meningitidis MC58

42.458

100

0.45
  ssb Neisseria gonorrhoeae MS11

42.458

100

0.45