Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HBA18_RS13225 Genome accession   NZ_CP050266
Coordinates   2837296..2838435 (-) Length   379 a.a.
NCBI ID   WP_244323502.1    Uniprot ID   -
Organism   Salinivibrio costicola strain M318     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2832296..2843435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA18_RS13190 (HBA18_13190) - 2832421..2832681 (-) 261 WP_096630355.1 DUF1488 family protein -
  HBA18_RS13195 (HBA18_13195) aroE 2832678..2833502 (-) 825 WP_167314959.1 shikimate dehydrogenase -
  HBA18_RS13200 (HBA18_13200) hemF 2833506..2834423 (-) 918 WP_096630350.1 oxygen-dependent coproporphyrinogen oxidase -
  HBA18_RS13205 (HBA18_13205) purE 2834602..2835084 (+) 483 WP_069362358.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HBA18_RS13210 (HBA18_13210) - 2835089..2836237 (+) 1149 WP_167314960.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HBA18_RS13215 (HBA18_13215) - 2836234..2836791 (-) 558 WP_167314961.1 type I DNA topoisomerase -
  HBA18_RS13220 (HBA18_13220) - 2836820..2837293 (-) 474 WP_096630346.1 DUF494 family protein -
  HBA18_RS13225 (HBA18_13225) dprA 2837296..2838435 (-) 1140 WP_244323502.1 DNA-processing protein DprA Machinery gene
  HBA18_RS13230 (HBA18_13230) - 2838395..2839456 (-) 1062 WP_167314962.1 LysM peptidoglycan-binding domain-containing protein -
  HBA18_RS13235 (HBA18_13235) def 2839574..2840086 (+) 513 WP_077458105.1 peptide deformylase -
  HBA18_RS13240 (HBA18_13240) fmt 2840094..2841038 (+) 945 WP_077641437.1 methionyl-tRNA formyltransferase -
  HBA18_RS13245 (HBA18_13245) rsmB 2841154..2842437 (+) 1284 WP_167314963.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 41408.67 Da        Isoelectric Point: 7.0751

>NTDB_id=431011 HBA18_RS13225 WP_244323502.1 2837296..2838435(-) (dprA) [Salinivibrio costicola strain M318]
MRCHRPLNWPMRDKSLRGWLILTQVPRLRVSQRRALLAKVPIDALSEQTAHDLAAVGLTAEQCHAVTHPNHAMIERSLEW
ARQENCHLIGFDHPAYPALLREIARPPLLLYVQGDLTCLAMPQLAMVGSRHATPQGLETAYQFAKQLVEHGVAITSGLAL
GIDGRAHKGALEGHGKTLAVLGSGLANVYPARHRALAERIEAQGALVSEFWPEAPPRAEHFPRRNRLISGLSAGVLVVEA
APQSGSLITARYALEQNRDVFAIPGPIDQVQSRGCHQLIKQGATLTDCVDDILHEIDSLISFAACQQTELFSDAPKLDTH
EGLPFPELLANVGTKATCVDVLAERCNQPVHEIMMQLLDLELQGLVAAVPGGYVRTRRG

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=431011 HBA18_RS13225 WP_244323502.1 2837296..2838435(-) (dprA) [Salinivibrio costicola strain M318]
ATGCGGTGCCACCGTCCCCTCAACTGGCCTATGCGCGATAAATCCCTGCGCGGGTGGTTGATACTGACCCAAGTGCCGCG
GTTGCGCGTTTCGCAGCGACGCGCGCTGTTGGCTAAAGTGCCCATCGATGCGTTGAGTGAGCAAACTGCTCATGATCTTG
CCGCGGTTGGTTTAACCGCTGAGCAGTGTCATGCCGTCACGCATCCCAATCATGCCATGATTGAGCGTAGCCTTGAGTGG
GCGAGGCAAGAGAATTGCCACCTGATTGGCTTTGACCACCCAGCTTACCCTGCATTACTCCGAGAAATCGCACGGCCGCC
TTTGCTCTTGTATGTGCAAGGCGATCTGACTTGCTTGGCGATGCCTCAATTGGCGATGGTGGGCAGTCGTCACGCGACCC
CGCAAGGTTTAGAAACGGCGTATCAATTTGCTAAACAACTGGTTGAGCATGGTGTTGCGATTACCAGTGGGCTTGCGCTA
GGTATCGATGGCCGAGCACACAAAGGTGCTCTTGAAGGCCACGGCAAGACATTAGCAGTGCTAGGAAGCGGGCTTGCCAA
TGTGTATCCTGCACGACATCGCGCATTGGCTGAGCGGATTGAAGCACAAGGCGCACTGGTCTCAGAGTTCTGGCCAGAGG
CTCCGCCAAGGGCTGAGCACTTTCCGCGGCGCAATCGACTGATCAGTGGGTTATCGGCAGGCGTATTAGTGGTAGAGGCC
GCGCCACAAAGTGGGTCGCTGATCACGGCACGTTATGCACTTGAGCAAAATCGTGATGTGTTTGCGATTCCCGGGCCCAT
TGATCAAGTCCAGTCGCGTGGGTGCCACCAATTGATTAAACAAGGGGCCACACTCACAGACTGTGTCGATGATATCTTGC
ATGAAATTGATAGCCTGATAAGCTTCGCCGCGTGTCAACAAACCGAATTATTTAGTGACGCGCCTAAGTTAGATACACAT
GAAGGATTGCCATTTCCTGAGCTGTTGGCTAACGTAGGTACTAAAGCGACGTGTGTCGACGTACTGGCTGAGCGCTGCAA
CCAACCGGTTCACGAAATCATGATGCAGTTGTTAGACTTAGAACTCCAGGGGCTTGTAGCAGCAGTACCCGGTGGCTATG
TCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(82-285)

DprA winged helix domain (DprA_WH)

(327-372)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

52.291

97.889

0.512
  dprA Vibrio cholerae strain A1552

50.535

98.681

0.499
  dprA Glaesserella parasuis strain SC1401

44.173

97.361

0.43
  dprA Legionella pneumophila strain ERS1305867

45.373

88.391

0.401
  dprA Haemophilus influenzae Rd KW20

44.543

89.446

0.398