Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G9473_RS10260 Genome accession   NZ_CP050265
Coordinates   2152823..2153365 (-) Length   180 a.a.
NCBI ID   WP_291133056.1    Uniprot ID   A0A6G9N9C4
Organism   MAG: Erythrobacter sp. isolate NP_1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2147823..2158365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9473_RS10230 (G9473_10165) hslU 2148063..2149361 (-) 1299 WP_291133046.1 ATP-dependent protease ATPase subunit HslU -
  G9473_RS10235 (G9473_10170) hslV 2149382..2149942 (-) 561 WP_291133048.1 ATP-dependent protease subunit HslV -
  G9473_RS10240 (G9473_10175) - 2149985..2150416 (-) 432 WP_291138402.1 outer membrane protein assembly factor BamE -
  G9473_RS10245 (G9473_10180) - 2150718..2151272 (+) 555 WP_291133050.1 ubiquinol-cytochrome C chaperone family protein -
  G9473_RS10250 (G9473_10185) - 2151283..2151813 (+) 531 WP_291133052.1 YceD family protein -
  G9473_RS10255 (G9473_10190) - 2151810..2152739 (-) 930 WP_291133054.1 DMT family transporter -
  G9473_RS10260 (G9473_10195) ssb 2152823..2153365 (-) 543 WP_291133056.1 single-stranded DNA-binding protein Machinery gene
  G9473_RS10265 (G9473_10200) - 2153497..2154180 (-) 684 WP_291138405.1 COQ9 family protein -
  G9473_RS10270 (G9473_10205) - 2154191..2154865 (-) 675 WP_291133057.1 ankyrin repeat domain-containing protein -
  G9473_RS10275 (G9473_10210) - 2154950..2155585 (+) 636 WP_291133059.1 SCO family protein -
  G9473_RS10280 (G9473_10215) - 2155573..2156079 (+) 507 WP_291133060.1 YcgN family cysteine cluster protein -
  G9473_RS10285 (G9473_10220) - 2156076..2156798 (+) 723 WP_291133062.1 M48 family metallopeptidase -
  G9473_RS10290 (G9473_10225) - 2156851..2157423 (+) 573 WP_291133064.1 DUF4402 domain-containing protein -
  G9473_RS10295 (G9473_10230) - 2157499..2157957 (+) 459 WP_291133066.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18274.87 Da        Isoelectric Point: 5.2612

>NTDB_id=430980 G9473_RS10260 WP_291133056.1 2152823..2153365(-) (ssb) [MAG: Erythrobacter sp. isolate NP_1]
MAGSLNKVMLIGNLGADPEVRTFQNGGKVCNLRVATSETWKDRNTGERQERTEWHSVAIFNEGLAGVAERYLKKGSKVYL
EGQLQTRKWQDQNGNDRYSTEVVLRGPGSVMTMLDGAPGGGGGGGRSGGGFGGGAGYGDRGAGGQPAGGGGGWNQGGGGS
GGGSGGGSGGYDDLDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=430980 G9473_RS10260 WP_291133056.1 2152823..2153365(-) (ssb) [MAG: Erythrobacter sp. isolate NP_1]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTCGGGGCGGACCCCGAAGTGCGCACGTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGCGTCGCGACGAGCGAGACGTGGAAGGACCGCAACACGGGTGAGCGGCAGGAACGCACCGAAT
GGCACTCTGTCGCGATCTTCAACGAAGGCCTCGCCGGGGTGGCGGAACGCTACCTGAAGAAAGGCAGCAAGGTCTATCTC
GAGGGCCAGCTCCAGACCCGCAAGTGGCAGGACCAGAACGGCAATGACCGCTATTCGACCGAAGTCGTGCTGCGCGGGCC
GGGCTCCGTCATGACCATGCTCGACGGTGCGCCGGGCGGCGGCGGCGGCGGCGGTCGCTCGGGCGGCGGCTTCGGCGGCG
GGGCGGGCTACGGCGATCGCGGTGCCGGCGGCCAGCCCGCCGGCGGCGGTGGCGGCTGGAACCAGGGCGGCGGCGGTTCG
GGGGGCGGCTCGGGCGGCGGTTCGGGCGGCTACGACGACCTCGACGACGACATTCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9N9C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.568

97.778

0.494
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.478
  ssb Neisseria meningitidis MC58

43.889

100

0.439
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.439