Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HBA75_RS28435 | Genome accession | NZ_CP050183 |
| Coordinates | 5571798..5572310 (-) | Length | 170 a.a. |
| NCBI ID | WP_000981966.1 | Uniprot ID | A0A0A3WKS9 |
| Organism | Bacillus thuringiensis strain HER1410 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5542649..5577616 | 5571798..5572310 | within | 0 |
Gene organization within MGE regions
Location: 5542649..5577616
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBA75_RS28280 (HBA75_28305) | galE | 5542649..5543665 (-) | 1017 | WP_000996540.1 | UDP-glucose 4-epimerase GalE | - |
| HBA75_RS28285 (HBA75_28310) | - | 5543850..5544497 (-) | 648 | WP_000995363.1 | hemolysin III family protein | - |
| HBA75_RS28290 (HBA75_28315) | - | 5544662..5545222 (+) | 561 | WP_000427879.1 | DUF1836 domain-containing protein | - |
| HBA75_RS28295 (HBA75_28320) | dbpA | 5545263..5546708 (-) | 1446 | WP_000039350.1 | ATP-dependent RNA helicase DbpA | - |
| HBA75_RS28300 (HBA75_28325) | guaC | 5547183..5548166 (+) | 984 | WP_000432447.1 | GMP reductase | - |
| HBA75_RS28305 (HBA75_28330) | pepF | 5548302..5550119 (+) | 1818 | WP_086412008.1 | oligoendopeptidase F | - |
| HBA75_RS28310 (HBA75_28335) | - | 5550181..5550417 (-) | 237 | Protein_5551 | IS3 family transposase | - |
| HBA75_RS28315 (HBA75_28340) | istB | 5550471..5551223 (-) | 753 | WP_000798699.1 | IS21-like element IS232 family helper ATPase IstB | - |
| HBA75_RS28320 (HBA75_28345) | istA | 5551213..5552508 (-) | 1296 | WP_000275580.1 | IS21-like element IS232 family transposase | - |
| HBA75_RS28325 (HBA75_28350) | - | 5552588..5553250 (-) | 663 | WP_174402574.1 | IS3 family transposase | - |
| HBA75_RS28330 (HBA75_28355) | - | 5553247..5553555 (-) | 309 | WP_086411305.1 | helix-turn-helix domain-containing protein | - |
| HBA75_RS28335 (HBA75_28360) | - | 5553652..5554530 (-) | 879 | WP_000713633.1 | radical SAM/SPASM domain-containing protein | - |
| HBA75_RS28340 (HBA75_28365) | - | 5554750..5556768 (-) | 2019 | WP_000253117.1 | GAF domain-containing sensor histidine kinase | - |
| HBA75_RS28345 (HBA75_28370) | rlmH | 5556837..5557316 (-) | 480 | WP_001027000.1 | 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH | - |
| HBA75_RS28350 (HBA75_28375) | - | 5557376..5557561 (-) | 186 | WP_001052827.1 | CxxH/CxxC protein | - |
| HBA75_RS28355 (HBA75_28380) | - | 5557615..5558790 (-) | 1176 | WP_000008031.1 | S1C family serine protease | - |
| HBA75_RS28360 (HBA75_28385) | - | 5558854..5559648 (-) | 795 | WP_000522837.1 | MBL fold metallo-hydrolase | - |
| HBA75_RS28365 (HBA75_28390) | - | 5559632..5560474 (-) | 843 | WP_000383740.1 | two-component system regulatory protein YycI | - |
| HBA75_RS28370 (HBA75_28395) | yycH | 5560455..5561771 (-) | 1317 | WP_000061560.1 | two-component system activity regulator YycH | - |
| HBA75_RS28375 (HBA75_28400) | walK | 5561768..5563609 (-) | 1842 | WP_000755367.1 | cell wall metabolism sensor histidine kinase WalK | - |
| HBA75_RS28380 (HBA75_28405) | walR | 5563613..5564320 (-) | 708 | WP_000971865.1 | cell wall metabolism DNA-binding response regulator WalR | - |
| HBA75_RS28405 (HBA75_28430) | - | 5565115..5566404 (-) | 1290 | WP_000100238.1 | adenylosuccinate synthase | - |
| HBA75_RS28410 (HBA75_28435) | dnaB | 5566620..5567981 (-) | 1362 | WP_001286148.1 | replicative DNA helicase | - |
| HBA75_RS28415 (HBA75_28440) | rplI | 5568009..5568455 (-) | 447 | WP_000864228.1 | 50S ribosomal protein L9 | - |
| HBA75_RS28420 (HBA75_28445) | - | 5568452..5570425 (-) | 1974 | WP_001113785.1 | DHH family phosphoesterase | - |
| HBA75_RS28425 (HBA75_28450) | - | 5570504..5571439 (-) | 936 | WP_000814837.1 | YybS family protein | - |
| HBA75_RS28430 (HBA75_28455) | rpsR | 5571519..5571752 (-) | 234 | WP_000918873.1 | 30S ribosomal protein S18 | - |
| HBA75_RS28435 (HBA75_28460) | ssbA | 5571798..5572310 (-) | 513 | WP_000981966.1 | single-stranded DNA-binding protein | Machinery gene |
| HBA75_RS28440 (HBA75_28465) | rpsF | 5572337..5572627 (-) | 291 | WP_001233778.1 | 30S ribosomal protein S6 | - |
| HBA75_RS28445 (HBA75_28470) | ychF | 5572819..5573919 (-) | 1101 | WP_000524657.1 | redox-regulated ATPase YchF | - |
| HBA75_RS28450 (HBA75_28475) | - | 5574035..5574232 (-) | 198 | WP_000435485.1 | DUF951 domain-containing protein | - |
| HBA75_RS28455 (HBA75_28480) | - | 5574253..5575134 (-) | 882 | WP_000364814.1 | mechanosensitive ion channel family protein | - |
| HBA75_RS28460 (HBA75_28485) | yyaC | 5575394..5575990 (+) | 597 | WP_001020714.1 | spore protease YyaC | - |
| HBA75_RS28465 (HBA75_28490) | spo0J | 5576011..5576862 (-) | 852 | WP_001051832.1 | stage 0 sporulation protein Spo0J | - |
| HBA75_RS28470 (HBA75_28495) | soj | 5576855..5577616 (-) | 762 | WP_000516115.1 | sporulation initiation inhibitor protein Soj | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18494.29 Da Isoelectric Point: 4.9327
>NTDB_id=430651 HBA75_RS28435 WP_000981966.1 5571798..5572310(-) (ssbA) [Bacillus thuringiensis strain HER1410]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=430651 HBA75_RS28435 WP_000981966.1 5571798..5572310(-) (ssbA) [Bacillus thuringiensis strain HER1410]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCACGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCACGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
72.571 |
100 |
0.747 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.621 |
100 |
0.6 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
62.353 |
0.406 |
| ssb | Glaesserella parasuis strain SC1401 |
37.43 |
100 |
0.394 |