Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HBA47_RS06715 Genome accession   NZ_CP050136
Coordinates   1267873..1269975 (-) Length   700 a.a.
NCBI ID   WP_003785828.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262873..1274975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS06695 (HBA47_06710) mutL 1263834..1265708 (+) 1875 WP_154700150.1 DNA mismatch repair endonuclease MutL -
  HBA47_RS06700 (HBA47_06715) - 1265787..1266203 (-) 417 WP_003785834.1 ProQ/FINO family protein -
  HBA47_RS06705 (HBA47_06720) aroB 1266222..1267304 (-) 1083 WP_038303704.1 3-dehydroquinate synthase -
  HBA47_RS06710 (HBA47_06725) - 1267304..1267816 (-) 513 WP_003789800.1 shikimate kinase -
  HBA47_RS06715 (HBA47_06730) pilQ 1267873..1269975 (-) 2103 WP_003785828.1 type IV pilus secretin PilQ Machinery gene
  HBA47_RS06720 (HBA47_06735) pilP 1270009..1270539 (-) 531 WP_019389251.1 pilus assembly protein PilP Machinery gene
  HBA47_RS06725 (HBA47_06740) pilO 1270573..1271196 (-) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  HBA47_RS06730 (HBA47_06745) - 1271199..1271858 (-) 660 WP_026036228.1 PilN domain-containing protein -
  HBA47_RS06735 (HBA47_06750) pilM 1271860..1272963 (-) 1104 WP_003785822.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 76297.99 Da        Isoelectric Point: 9.3714

>NTDB_id=430295 HBA47_RS06715 WP_003785828.1 1267873..1269975(-) (pilQ) [Kingella kingae strain ATCC 23332]
MKKNSLEALSVLSLSMVMQAAFAGNITDINVSVLPDQQRVIKLKFDSAPVEPTGFTTATPARIALDFPGTSVKVPQAALS
FNDALLNQIIAAQNDNNARILLGLAKEGQYNAQVRGNEVWIYVSESKSTNTATVHQASAADNSAANYTPAAATSGFNVDF
RKGGQNSGLVEFSSAYTGQPQVKVQSDRLVITLKNYPLATQDQRNFDVTDFSTPVRTVTVKRIGNDTQITIRNQGSWEHK
VTQSNGRHVIQVLPTRNVAESAANGKRAQQNFTGKRISLDFQNIEVRTVLQILAQESGMNIVASDSVQGKMTLSLKDVPW
DQALDLVMDARNLDMRKHGNIINIAPRQELLDKDRNEAKARREMEDLGALYSKTFQLKYKNVEEFKNILRLSDSPNTNDR
SNILSTRGSALIDPATNTLIVTDNQSVIQKFERLIDELDVPAKQVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW
NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENLTKTISTPRVLTQDRKEAEIR
QGTQIPYTTRSSDGDSSTAFKDAVLSLKVTPRITPDSKIILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATL
VVGGIYQEQMANNVSKVPLLGDIPVLGNLFKSRSRSRSRNELLFFITPRIMGAESSVLRY

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=430295 HBA47_RS06715 WP_003785828.1 1267873..1269975(-) (pilQ) [Kingella kingae strain ATCC 23332]
ATGAAAAAGAATTCATTGGAAGCATTGTCAGTACTAAGTTTGAGCATGGTAATGCAGGCTGCTTTTGCAGGAAATATTAC
GGATATCAATGTATCGGTACTACCTGACCAGCAACGAGTAATTAAATTAAAATTTGATAGTGCACCTGTTGAACCTACTG
GTTTTACTACAGCCACGCCTGCTCGTATTGCTTTGGATTTCCCAGGTACGAGTGTTAAAGTTCCCCAGGCAGCTTTGAGT
TTTAATGATGCATTGTTGAATCAAATTATTGCTGCGCAAAATGATAATAATGCACGTATTTTGTTAGGCTTGGCAAAAGA
AGGTCAATATAATGCTCAAGTTCGCGGTAATGAAGTATGGATTTATGTAAGCGAATCAAAATCAACCAATACAGCGACAG
TTCATCAAGCATCTGCTGCGGATAATTCTGCTGCAAACTACACGCCAGCAGCAGCTACATCTGGTTTTAATGTGGACTTC
CGCAAAGGTGGACAAAATTCGGGTTTGGTTGAATTTTCATCAGCCTATACTGGTCAGCCGCAGGTTAAAGTGCAATCGGA
TCGTTTGGTTATTACTTTGAAAAACTATCCGTTGGCTACGCAAGATCAGCGCAATTTCGATGTAACTGATTTTTCAACAC
CAGTTCGCACAGTTACCGTTAAACGTATTGGCAATGATACGCAGATTACGATTCGTAACCAAGGTAGCTGGGAACATAAG
GTCACTCAAAGCAATGGTCGCCATGTAATTCAAGTACTACCTACGCGCAATGTGGCAGAATCAGCTGCCAATGGTAAACG
TGCACAGCAAAATTTCACAGGCAAACGTATTTCGTTAGACTTTCAAAATATTGAAGTTCGTACTGTTTTGCAAATTTTGG
CACAAGAATCAGGTATGAATATCGTAGCCAGTGATAGTGTGCAAGGCAAAATGACATTGTCATTAAAAGATGTGCCTTGG
GATCAAGCCTTGGATTTGGTAATGGATGCGCGTAATTTGGATATGCGTAAACATGGCAATATTATTAACATTGCGCCACG
CCAAGAATTGCTGGATAAAGACCGCAATGAAGCAAAAGCACGCCGAGAAATGGAAGATTTGGGTGCGTTGTATTCCAAAA
CATTTCAGTTGAAATACAAAAATGTGGAAGAATTCAAAAATATTTTACGTTTGAGTGATTCACCAAATACTAACGACAGA
AGTAACATTTTAAGTACTCGTGGTAGTGCCTTGATTGACCCTGCAACTAACACTTTGATTGTAACTGATAACCAATCTGT
TATTCAGAAATTTGAGCGATTGATTGATGAGTTGGACGTTCCTGCTAAACAAGTAATGGTAGAAGCGCGTATTGTGGAAG
CTGCTGATGGTGTATCACGAAGTTTGGGTGTCAAGTTTGGTGCTCGTCGTAATGGTGCAACATCATGGGGTGGAGACTGG
AATAACAGTATCGCATTGAATAATCGCTCTACTAATTCTGGTACATCAACTGGTGGTGTTGCTTTCAATCCAAATGTAAA
CTTGCCTGTTGCTTCTGCGACTAGCTCTATTTCGGTTATCCATTCTTGGGCTGCTGGTGCATTGGGCTTAGAATTATCTG
CGATGGAAACAGAGAATTTAACTAAAACAATTTCAACTCCTCGAGTTTTGACACAAGACCGTAAAGAGGCAGAAATTCGT
CAAGGTACACAAATTCCTTATACTACTCGCAGCAGTGATGGCGATAGTAGTACGGCATTTAAAGATGCAGTGTTGAGCTT
AAAAGTAACGCCACGTATTACGCCTGACAGCAAAATCATCTTGGATATTGCGATTAACAAAGATGAACCTGATTACAATA
ATGTAAATGCCGAAGGCGAACCAGGTATTGTCACTCGTGCAGTTAAAACGCAAGCAATGATTGAAGATGGTGCAACCTTG
GTTGTGGGTGGTATTTATCAAGAACAAATGGCTAATAACGTTAGCAAAGTACCTTTATTGGGCGATATCCCAGTATTGGG
TAATTTGTTTAAATCTCGCTCGCGTAGCCGTAGTCGCAATGAATTGCTGTTCTTCATCACGCCACGCATTATGGGGGCGG
AAAGCAGTGTATTGCGCTACTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(36-115)

Bacterial type II and III secretion system protein (Secretin)

(534-691)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

52.089

100

0.534
  pilQ Neisseria meningitidis MC58

55.415

79.143

0.439
  pilQ Neisseria meningitidis M1080

55.054

79.143

0.436