Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HBA47_RS06720 Genome accession   NZ_CP050136
Coordinates   1270009..1270539 (-) Length   176 a.a.
NCBI ID   WP_019389251.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1265009..1275539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS06700 (HBA47_06715) - 1265787..1266203 (-) 417 WP_003785834.1 ProQ/FINO family protein -
  HBA47_RS06705 (HBA47_06720) aroB 1266222..1267304 (-) 1083 WP_038303704.1 3-dehydroquinate synthase -
  HBA47_RS06710 (HBA47_06725) - 1267304..1267816 (-) 513 WP_003789800.1 shikimate kinase -
  HBA47_RS06715 (HBA47_06730) pilQ 1267873..1269975 (-) 2103 WP_003785828.1 type IV pilus secretin PilQ Machinery gene
  HBA47_RS06720 (HBA47_06735) pilP 1270009..1270539 (-) 531 WP_019389251.1 pilus assembly protein PilP Machinery gene
  HBA47_RS06725 (HBA47_06740) pilO 1270573..1271196 (-) 624 WP_003785825.1 type 4a pilus biogenesis protein PilO -
  HBA47_RS06730 (HBA47_06745) - 1271199..1271858 (-) 660 WP_026036228.1 PilN domain-containing protein -
  HBA47_RS06735 (HBA47_06750) pilM 1271860..1272963 (-) 1104 WP_003785822.1 type IV pilus assembly protein PilM -
  HBA47_RS06740 (HBA47_06755) - 1273105..1275474 (+) 2370 WP_154700149.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19422.18 Da        Isoelectric Point: 5.2810

>NTDB_id=430296 HBA47_RS06720 WP_019389251.1 1270009..1270539(-) (pilP) [Kingella kingae strain ATCC 23332]
MKVKLFLMSALVLAGCSEQYGDLQEWMSQARAEAKTKVRPVEPLAPIEPVTYFAPQITGPNAFNMQRMKAAFQNGNAPDL
NRSKELLENYSLENLRYVGSIGTPGSLSALIEIQVNGEPHVYTVKQGNYLGQNFGRISKITADKIDLIETVEDTYGNWVN
RPAELLPMTDAAATAK

Nucleotide


Download         Length: 531 bp        

>NTDB_id=430296 HBA47_RS06720 WP_019389251.1 1270009..1270539(-) (pilP) [Kingella kingae strain ATCC 23332]
ATGAAAGTTAAATTATTTTTGATGTCGGCACTAGTGCTGGCAGGCTGTTCTGAACAGTATGGGGATTTGCAAGAGTGGAT
GAGTCAAGCAAGAGCAGAGGCAAAAACAAAAGTTCGCCCTGTTGAGCCTTTGGCACCGATTGAACCCGTTACTTATTTTG
CACCTCAAATTACAGGGCCGAATGCGTTTAATATGCAACGTATGAAAGCAGCTTTCCAAAATGGTAATGCGCCAGATTTG
AACCGAAGTAAAGAATTGCTAGAAAATTATAGTCTAGAGAATTTACGGTATGTTGGTTCAATTGGTACTCCTGGTTCATT
ATCGGCTTTGATTGAAATCCAAGTAAATGGAGAGCCACACGTTTACACAGTGAAGCAAGGCAATTATTTGGGACAAAATT
TTGGTCGTATCTCTAAAATTACAGCGGATAAAATTGATTTGATTGAAACTGTAGAAGATACGTATGGAAATTGGGTCAAT
CGACCAGCAGAGTTGCTGCCTATGACAGATGCAGCTGCTACTGCTAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

51.497

94.886

0.489