Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HBA47_RS04040 | Genome accession | NZ_CP050136 |
| Coordinates | 745697..746146 (+) | Length | 149 a.a. |
| NCBI ID | WP_026036319.1 | Uniprot ID | - |
| Organism | Kingella kingae strain ATCC 23332 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 712721..748670 | 745697..746146 | within | 0 |
Gene organization within MGE regions
Location: 712721..748670
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HBA47_RS03840 (HBA47_03850) | - | 713784..714122 (+) | 339 | WP_019390140.1 | hypothetical protein | - |
| HBA47_RS03845 (HBA47_03855) | - | 714173..714412 (+) | 240 | WP_154700265.1 | hypothetical protein | - |
| HBA47_RS03850 (HBA47_03860) | - | 714531..715301 (+) | 771 | WP_154700264.1 | DNA adenine methylase | - |
| HBA47_RS03855 (HBA47_03865) | - | 715529..716803 (-) | 1275 | WP_003786505.1 | M23 family metallopeptidase | - |
| HBA47_RS03860 (HBA47_03870) | - | 716918..717838 (+) | 921 | WP_100215676.1 | hypothetical protein | - |
| HBA47_RS03865 (HBA47_03875) | - | 717930..718496 (-) | 567 | WP_060536953.1 | ISAs1 family transposase | - |
| HBA47_RS03870 (HBA47_03880) | - | 718524..718772 (-) | 249 | WP_230311313.1 | transposase family protein | - |
| HBA47_RS10890 (HBA47_03885) | - | 718911..719393 (-) | 483 | WP_060537125.1 | IS5/IS1182 family transposase | - |
| HBA47_RS10895 (HBA47_03890) | - | 719411..719674 (-) | 264 | WP_154700263.1 | transposase | - |
| HBA47_RS03880 (HBA47_03895) | - | 719911..721524 (+) | 1614 | WP_019390144.1 | phosphoethanolamine transferase | - |
| HBA47_RS03885 (HBA47_03900) | - | 721605..722573 (-) | 969 | WP_019390145.1 | KpsF/GutQ family sugar-phosphate isomerase | - |
| HBA47_RS11120 | - | 723009..723263 (-) | 255 | WP_230311312.1 | hypothetical protein | - |
| HBA47_RS11125 | - | 723295..723438 (-) | 144 | WP_230311311.1 | hypothetical protein | - |
| HBA47_RS03895 (HBA47_03910) | - | 723435..723908 (-) | 474 | WP_019390147.1 | DUF4376 domain-containing protein | - |
| HBA47_RS03900 (HBA47_03915) | - | 724260..724742 (-) | 483 | WP_019390149.1 | phage virion morphogenesis protein | - |
| HBA47_RS03905 (HBA47_03920) | - | 724739..725650 (-) | 912 | WP_060537124.1 | phage minor head protein | - |
| HBA47_RS03910 (HBA47_03925) | - | 725650..727044 (-) | 1395 | WP_230311310.1 | DUF935 family protein | - |
| HBA47_RS03915 (HBA47_03930) | - | 727012..727446 (+) | 435 | WP_019390151.1 | phage major tail tube protein | - |
| HBA47_RS03920 (HBA47_03935) | - | 727580..727870 (+) | 291 | WP_003786198.1 | phage tail assembly protein | - |
| HBA47_RS03925 (HBA47_03940) | - | 727905..728039 (+) | 135 | WP_038331510.1 | GpE family phage tail protein | - |
| HBA47_RS03930 (HBA47_03945) | - | 728052..728210 (-) | 159 | WP_154700262.1 | hypothetical protein | - |
| HBA47_RS03935 (HBA47_03950) | - | 728324..728890 (-) | 567 | WP_060536953.1 | ISAs1 family transposase | - |
| HBA47_RS03940 (HBA47_03955) | - | 728918..729166 (-) | 249 | WP_230311240.1 | transposase family protein | - |
| HBA47_RS03945 (HBA47_03960) | - | 729223..729366 (+) | 144 | WP_230311309.1 | hypothetical protein | - |
| HBA47_RS03950 (HBA47_03965) | - | 729937..731034 (-) | 1098 | WP_154700272.1 | phage tail protein | - |
| HBA47_RS11130 | - | 731032..731217 (-) | 186 | Protein_767 | hypothetical protein | - |
| HBA47_RS03955 (HBA47_03970) | - | 731316..731891 (-) | 576 | WP_166503130.1 | YmfQ family protein | - |
| HBA47_RS03960 (HBA47_03975) | - | 731897..732952 (-) | 1056 | WP_154699912.1 | baseplate J/gp47 family protein | - |
| HBA47_RS03965 (HBA47_03980) | - | 732988..733335 (-) | 348 | WP_154700107.1 | phage GP46 family protein | - |
| HBA47_RS03970 (HBA47_03985) | - | 733588..734208 (-) | 621 | WP_032133701.1 | phage baseplate assembly protein V | - |
| HBA47_RS03975 (HBA47_03990) | - | 734302..735432 (-) | 1131 | WP_019390158.1 | phage baseplate assembly protein | - |
| HBA47_RS03980 (HBA47_03995) | - | 735459..736046 (-) | 588 | WP_154700261.1 | hypothetical protein | - |
| HBA47_RS03985 (HBA47_04000) | - | 736404..739745 (+) | 3342 | WP_060537120.1 | Ig-like domain-containing protein | - |
| HBA47_RS03990 (HBA47_04005) | - | 739939..740439 (-) | 501 | WP_019389893.1 | transglycosylase SLT domain-containing protein | - |
| HBA47_RS03995 (HBA47_04010) | - | 740767..741018 (-) | 252 | WP_019389894.1 | helix-turn-helix domain-containing protein | - |
| HBA47_RS04000 (HBA47_04015) | - | 741082..741366 (-) | 285 | WP_019389895.1 | CII family transcriptional regulator | - |
| HBA47_RS04005 (HBA47_04020) | - | 741481..742047 (-) | 567 | WP_060536953.1 | ISAs1 family transposase | - |
| HBA47_RS04010 (HBA47_04025) | - | 742075..742323 (-) | 249 | WP_230311308.1 | transposase family protein | - |
| HBA47_RS04015 (HBA47_04030) | - | 742366..743055 (+) | 690 | WP_154700260.1 | YqaJ viral recombinase family protein | - |
| HBA47_RS04020 (HBA47_04035) | - | 743118..743726 (-) | 609 | WP_019389897.1 | KilA-N domain-containing protein | - |
| HBA47_RS04025 (HBA47_04040) | - | 744036..744359 (-) | 324 | WP_154700259.1 | DUF2335 domain-containing protein | - |
| HBA47_RS04030 (HBA47_04045) | - | 744384..744524 (-) | 141 | WP_154700258.1 | hypothetical protein | - |
| HBA47_RS04035 (HBA47_04050) | recT | 744736..745407 (+) | 672 | WP_243755368.1 | recombination protein RecT | - |
| HBA47_RS11135 | - | 745364..745690 (+) | 327 | WP_243755370.1 | hypothetical protein | - |
| HBA47_RS04040 (HBA47_04055) | ssb | 745697..746146 (+) | 450 | WP_026036319.1 | single-stranded DNA-binding protein | Machinery gene |
| HBA47_RS04045 (HBA47_04060) | - | 746208..747161 (+) | 954 | WP_019389901.1 | hypothetical protein | - |
| HBA47_RS04050 (HBA47_04065) | - | 747175..747336 (+) | 162 | WP_019389902.1 | hypothetical protein | - |
| HBA47_RS04055 (HBA47_04070) | - | 747343..747636 (+) | 294 | WP_019389903.1 | hypothetical protein | - |
| HBA47_RS04060 (HBA47_04075) | - | 747657..748370 (-) | 714 | WP_230311307.1 | site-specific integrase | - |
| HBA47_RS11140 | - | 748377..748670 (-) | 294 | WP_230311306.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 16586.95 Da Isoelectric Point: 7.8071
>NTDB_id=430287 HBA47_RS04040 WP_026036319.1 745697..746146(+) (ssb) [Kingella kingae strain ATCC 23332]
MMLNKAILIGRLGKDPELRYMLQGDAVCNFSVATSESWKDQQGIKQERTEWHNITMYRKTAEIAGQYLRKGSLVYLEGKI
QTNKYVGKDGVERTAYNIVCDIMKMLGSKDDNAPTAQPAQTAPIAPPTQKQPANAPVAPQENIDSDIPF
MMLNKAILIGRLGKDPELRYMLQGDAVCNFSVATSESWKDQQGIKQERTEWHNITMYRKTAEIAGQYLRKGSLVYLEGKI
QTNKYVGKDGVERTAYNIVCDIMKMLGSKDDNAPTAQPAQTAPIAPPTQKQPANAPVAPQENIDSDIPF
Nucleotide
Download Length: 450 bp
>NTDB_id=430287 HBA47_RS04040 WP_026036319.1 745697..746146(+) (ssb) [Kingella kingae strain ATCC 23332]
ATCATGCTAAACAAAGCCATCTTAATCGGACGATTGGGCAAAGACCCCGAACTGCGCTATATGCTACAAGGCGATGCCGT
ATGTAATTTCAGCGTTGCCACTTCTGAAAGCTGGAAAGACCAGCAAGGAATTAAGCAAGAGCGCACCGAATGGCACAACA
TCACGATGTATCGCAAAACCGCCGAAATCGCAGGGCAATATTTGCGAAAAGGCAGCCTAGTTTACTTGGAAGGCAAAATC
CAAACCAACAAATACGTTGGCAAAGACGGCGTGGAACGCACCGCATACAACATCGTGTGCGACATCATGAAAATGCTAGG
CAGCAAAGACGATAACGCACCAACCGCGCAGCCAGCGCAAACTGCGCCCATTGCACCGCCAACGCAAAAGCAGCCTGCAA
ATGCGCCAGTCGCACCGCAAGAAAATATTGACAGCGACATTCCGTTTTAA
ATCATGCTAAACAAAGCCATCTTAATCGGACGATTGGGCAAAGACCCCGAACTGCGCTATATGCTACAAGGCGATGCCGT
ATGTAATTTCAGCGTTGCCACTTCTGAAAGCTGGAAAGACCAGCAAGGAATTAAGCAAGAGCGCACCGAATGGCACAACA
TCACGATGTATCGCAAAACCGCCGAAATCGCAGGGCAATATTTGCGAAAAGGCAGCCTAGTTTACTTGGAAGGCAAAATC
CAAACCAACAAATACGTTGGCAAAGACGGCGTGGAACGCACCGCATACAACATCGTGTGCGACATCATGAAAATGCTAGG
CAGCAAAGACGATAACGCACCAACCGCGCAGCCAGCGCAAACTGCGCCCATTGCACCGCCAACGCAAAAGCAGCCTGCAA
ATGCGCCAGTCGCACCGCAAGAAAATATTGACAGCGACATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Neisseria meningitidis MC58 |
58.757 |
100 |
0.698 |
| ssb | Neisseria gonorrhoeae MS11 |
58.757 |
100 |
0.698 |
| ssb | Vibrio cholerae strain A1552 |
42.775 |
100 |
0.497 |
| ssb | Glaesserella parasuis strain SC1401 |
41.243 |
100 |
0.49 |