Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HBA47_RS02725 Genome accession   NZ_CP050136
Coordinates   514113..514952 (+) Length   279 a.a.
NCBI ID   WP_341785704.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509113..519952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS02705 (HBA47_02715) - 509468..509629 (+) 162 WP_003787775.1 lipoprotein -
  HBA47_RS02710 (HBA47_02720) lysA 509626..510855 (+) 1230 WP_154699894.1 diaminopimelate decarboxylase -
  HBA47_RS02715 (HBA47_02725) pilF 511041..512726 (+) 1686 WP_003787777.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HBA47_RS02720 (HBA47_02730) pilG 512773..514041 (+) 1269 WP_019389681.1 type II secretion system F family protein Machinery gene
  HBA47_RS02725 (HBA47_02735) pilD 514113..514952 (+) 840 WP_341785704.1 A24 family peptidase Machinery gene
  HBA47_RS02730 (HBA47_02740) coaE 514954..515562 (+) 609 WP_003787784.1 dephospho-CoA kinase -
  HBA47_RS02735 (HBA47_02745) zapD 515677..516438 (+) 762 WP_019389683.1 cell division protein ZapD -
  HBA47_RS02740 (HBA47_02750) pncC 516458..516934 (+) 477 WP_003787789.1 nicotinamide-nucleotide amidase -
  HBA47_RS02745 (HBA47_02755) - 516944..517564 (+) 621 WP_019389684.1 L-threonylcarbamoyladenylate synthase -
  HBA47_RS02750 (HBA47_02760) - 517641..518834 (-) 1194 WP_038307267.1 acetate kinase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 31045.82 Da        Isoelectric Point: 7.8146

>NTDB_id=430286 HBA47_RS02725 WP_341785704.1 514113..514952(+) (pilD) [Kingella kingae strain ATCC 23332]
MVIYRLPVMLNRDWTEAACEQLNINDEFWQKQPASVEQCLREHFGLNRAVSGTFNLMTPPSRCGNCGSAVRPWQNIPVLS
WLMLRGKCAGCHTPISIRYPLVELLTGVLFAVMAFKYGWTWYTVGACLFTAYVVAMTFIDADTQLLPDDLTIPLMRWGLL
FNLLTGFIPLTQSVWGMLIGYMSLWTLSQTYKLIRGVDGMGAGDFKMLAAIGAWLGAWILPVVIFAAAMVFLVVAIIRGI
GKEQPMAYGPCLGVAGWLVFLFYDVVMRGVTAWLTGSGF

Nucleotide


Download         Length: 840 bp        

>NTDB_id=430286 HBA47_RS02725 WP_341785704.1 514113..514952(+) (pilD) [Kingella kingae strain ATCC 23332]
GTGGTCATTTATCGGCTGCCCGTGATGCTTAACCGCGATTGGACAGAAGCAGCCTGCGAGCAACTCAATATCAACGATGA
ATTTTGGCAAAAGCAGCCTGCATCCGTAGAACAATGTCTGCGCGAACACTTTGGCTTAAACCGTGCTGTGTCAGGCACAT
TCAACTTGATGACACCGCCATCGCGTTGTGGCAACTGCGGTTCAGCCGTGCGCCCTTGGCAAAACATTCCTGTGTTGAGC
TGGTTGATGTTGCGTGGCAAATGTGCAGGCTGCCACACACCCATTAGCATTCGCTATCCTTTGGTAGAACTACTCACAGG
CGTGTTGTTTGCGGTAATGGCATTCAAGTATGGCTGGACTTGGTACACCGTAGGCGCGTGTTTGTTTACCGCTTATGTCG
TTGCCATGACCTTTATTGATGCCGACACGCAACTTTTGCCCGATGACTTAACCATTCCATTGATGCGCTGGGGCTTGTTG
TTTAACTTGCTCACAGGCTTCATTCCGCTAACGCAATCGGTTTGGGGCATGTTGATTGGCTACATGAGTCTGTGGACGCT
GTCGCAAACCTATAAACTAATTCGTGGCGTGGACGGCATGGGCGCAGGCGATTTCAAAATGCTGGCTGCGATTGGTGCGT
GGCTGGGCGCATGGATTTTGCCTGTGGTGATTTTTGCTGCGGCGATGGTGTTTTTGGTGGTTGCCATTATTCGGGGCATT
GGCAAAGAACAGCCAATGGCATACGGCCCGTGTTTGGGCGTTGCCGGCTGGTTGGTCTTTTTGTTTTACGATGTGGTGAT
GCGTGGCGTAACAGCTTGGCTCACTGGGTCGGGTTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(129-235)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(2-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

50.545

98.566

0.498
  pilD Vibrio cholerae strain A1552

39.927

97.849

0.391
  pilD Acinetobacter baumannii D1279779

40

96.774

0.387
  pilD Vibrio campbellii strain DS40M4

40.152

94.624

0.38
  pilD Acinetobacter nosocomialis M2

39.259

96.774

0.38