Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   VFU_RS11595 Genome accession   NC_016602
Coordinates   2479328..2481568 (-) Length   746 a.a.
NCBI ID   WP_081454203.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2474328..2486568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS11575 (vfu_A02385) kdsB 2475633..2476376 (-) 744 WP_014205388.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VFU_RS11580 (vfu_A02386) - 2476376..2476555 (-) 180 WP_004726449.1 Trm112 family protein -
  VFU_RS11585 (vfu_A02387) lpxK 2476536..2477543 (-) 1008 WP_014205389.1 tetraacyldisaccharide 4'-kinase -
  VFU_RS11590 (vfu_A02388) msbA 2477547..2479295 (-) 1749 WP_004726451.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  VFU_RS11595 (vfu_A02389) comEC 2479328..2481568 (-) 2241 WP_081454203.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VFU_RS11600 (vfu_A02390) - 2481577..2482107 (+) 531 WP_004726453.1 DUF2062 domain-containing protein -
  VFU_RS11605 (vfu_A02391) lolE 2482245..2483489 (-) 1245 WP_014205391.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  VFU_RS11610 (vfu_A02392) lolD 2483490..2484176 (-) 687 WP_014205392.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VFU_RS11615 (vfu_A02393) lolC 2484169..2485377 (-) 1209 WP_041942585.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  VFU_RS11620 (vfu_A02394) - 2485553..2486122 (+) 570 WP_014205394.1 hypothetical protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 83140.80 Da        Isoelectric Point: 9.5402

>NTDB_id=42945 VFU_RS11595 WP_081454203.1 2479328..2481568(-) (comEC) [Vibrio furnissii NCTC 11218]
MTLYSNYWILISFSLTVLSAPYWPRMPSWGFAFICLVALMGTVLVTRLRGWGGIAFAVLVIVTHGNVMRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGNEGSIVVRSINGQQLPTFRQPIVRLVAPIALHIGDQVTFSVTVKPIYGRLNETGFDIESYYF
SQGWVARATVKPQSAFSVVSRPSWRDTLHQKIQVATQHLQAQGMILALTFGDRNGIQEDDWRALRDSGLIHLVAISGLHI
GMAFAVGYLLGSALMRIHVNALWLPWIVGLLMATVYAWLAGFTLPTQRALLMCTLNVLLTMSGWRITAVQRILLTLGALL
LVSPFAPLSMSFWLSFLAVAVVLYQLASCSSTQRGWRQLVMTQCTLVLLMTPISALFFSGFSLSSALYNLVFIPWFSVMI
VPLLFLGLVLTSLFEQVDWIWTLIDLSFWPLSQALTLSESSWVAVSHATTFVLCAGGIGWVLRPLLSRDARIAVVLLALG
MWAFNSPKDRWRIDVLDVGHGLAVLIERQQRVLLYDTGSGWPDGSYVRSLVVPLLHQRGVHQLDGLIISHMDSDHAGGLA
DAQQWLSPSWILASQRQPQWRTCVAGQQWDWQGLRLQALWPPKTVSRAHNVHSCVLRLSDPEYGHSVLLAGDVTAVGEWL
LSRQAKDIKSDIMIVPHHGSKTSSTARFIEHVAPQVAIASLAKGNQWHLPDQDVVQRYQATGAKWLDTGEAGQITLSYRA
ETRLLSTLRQSGYPPWYRQMLRKGVE

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=42945 VFU_RS11595 WP_081454203.1 2479328..2481568(-) (comEC) [Vibrio furnissii NCTC 11218]
ATGACTCTCTATTCGAATTATTGGATACTCATTTCGTTCTCGCTCACCGTCTTGTCTGCACCCTATTGGCCGCGGATGCC
AAGTTGGGGTTTTGCATTCATTTGCCTTGTCGCTCTGATGGGCACCGTATTAGTCACTCGGCTCAGAGGATGGGGCGGGA
TCGCGTTTGCCGTGTTAGTGATAGTAACACATGGCAACGTAATGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAGGTTGACAGCTTTTTTAAGCAAATAAGTTACGGGAATGAAGGCAGTATCGTGGTGAGATC
AATTAACGGTCAACAATTGCCCACCTTTCGTCAGCCGATTGTCCGATTAGTCGCGCCCATTGCGCTCCATATCGGCGATC
AGGTGACGTTTTCAGTCACGGTGAAACCGATTTATGGACGCCTCAATGAAACCGGATTTGATATAGAATCATACTATTTC
AGCCAAGGTTGGGTTGCTCGCGCGACCGTCAAACCGCAGTCGGCGTTTTCGGTCGTCTCTCGACCCAGCTGGCGGGACAC
TTTGCACCAAAAAATCCAAGTTGCTACGCAACATCTCCAAGCGCAAGGCATGATTTTGGCGCTGACGTTTGGCGACCGCA
ATGGCATTCAGGAAGATGACTGGCGCGCGCTTCGCGATAGCGGATTAATCCATTTGGTTGCGATTTCTGGACTGCACATC
GGCATGGCTTTCGCTGTAGGCTATTTGTTGGGAAGCGCGTTGATGCGCATCCACGTCAACGCGCTGTGGCTGCCATGGAT
CGTCGGTCTGCTGATGGCCACGGTGTACGCGTGGCTGGCTGGATTTACCTTGCCGACACAGCGCGCGTTGCTCATGTGTA
CGCTGAATGTGCTATTGACCATGAGCGGGTGGCGCATCACGGCTGTGCAGCGCATTCTGTTGACACTGGGCGCGTTGCTG
CTGGTGTCGCCATTTGCGCCGCTGTCGATGAGTTTTTGGTTGTCGTTCTTGGCCGTCGCGGTCGTGTTGTATCAGCTCGC
GAGTTGTTCATCGACGCAACGTGGATGGCGACAGCTTGTCATGACGCAGTGTACGTTGGTTCTATTGATGACGCCGATCT
CTGCGCTGTTTTTCTCTGGTTTTAGCCTATCGTCGGCGCTCTACAACTTGGTGTTTATTCCGTGGTTCAGTGTGATGATT
GTGCCGCTGCTGTTCTTGGGGTTGGTCTTGACGTCGTTGTTTGAGCAAGTCGATTGGATATGGACGCTGATTGATCTCAG
CTTTTGGCCTTTGAGTCAGGCATTAACACTCTCTGAATCCAGTTGGGTGGCAGTCAGCCATGCCACCACATTCGTGTTGT
GCGCTGGCGGGATCGGTTGGGTGCTGCGTCCACTGCTGAGTCGCGATGCACGAATTGCTGTGGTACTACTCGCGCTTGGC
ATGTGGGCATTCAATTCGCCCAAGGATCGCTGGCGCATTGATGTGCTTGATGTCGGCCATGGTCTGGCGGTGCTGATTGA
GCGCCAGCAGCGCGTGTTGCTTTATGACACCGGCAGTGGTTGGCCTGATGGCAGTTACGTGCGCTCACTGGTGGTGCCAC
TGCTTCACCAACGTGGCGTGCATCAACTGGATGGGTTGATTATCAGTCATATGGATAGCGATCATGCCGGCGGTTTGGCG
GATGCGCAGCAATGGTTGTCTCCGTCATGGATACTGGCCAGTCAACGTCAACCCCAATGGCGAACGTGTGTTGCAGGGCA
ACAATGGGATTGGCAGGGGCTGAGATTACAGGCGTTGTGGCCGCCGAAAACGGTCTCGCGCGCGCACAATGTGCACTCCT
GCGTGCTGAGGCTCAGCGATCCTGAATATGGTCATTCCGTGTTGTTGGCTGGCGATGTGACGGCAGTCGGTGAGTGGTTA
CTCAGTCGCCAAGCCAAAGATATCAAGAGCGATATCATGATTGTGCCTCATCATGGTAGCAAAACTTCCTCGACCGCTCG
CTTTATCGAACACGTGGCGCCGCAGGTGGCAATCGCCTCGTTGGCCAAAGGCAATCAATGGCATCTGCCCGATCAAGACG
TGGTTCAACGCTATCAAGCAACTGGGGCAAAGTGGCTGGATACGGGGGAGGCGGGGCAAATCACCCTCAGCTATCGTGCA
GAAACTCGTCTATTATCAACATTGCGCCAGTCAGGATATCCCCCTTGGTATAGGCAGATGCTACGTAAAGGGGTAGAATG
A

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(208-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

54.377

100

0.55
  comEC Vibrio campbellii strain DS40M4

43.008

100

0.437
  comEC Vibrio parahaemolyticus RIMD 2210633

42.348

100

0.43

Multiple sequence alignment