Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   G9U50_RS04370 Genome accession   NZ_CP049938
Coordinates   835287..836234 (+) Length   315 a.a.
NCBI ID   WP_000903642.1    Uniprot ID   A0AAV3JK20
Organism   Streptococcus agalactiae strain ZQ0910     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 830287..841234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9U50_RS04345 (G9U50_04345) - 830636..831316 (+) 681 WP_000656582.1 VIT family protein -
  G9U50_RS04350 (G9U50_04350) - 831467..832168 (+) 702 WP_001263956.1 glucosamine-6-phosphate deaminase -
  G9U50_RS04355 (G9U50_04355) - 832249..833196 (-) 948 WP_000523787.1 glutathione S-transferase family protein -
  G9U50_RS04360 (G9U50_04360) - 833292..834011 (+) 720 WP_001234956.1 pseudouridine synthase -
  G9U50_RS04365 (G9U50_04365) - 834084..835235 (+) 1152 WP_001086200.1 MFS transporter -
  G9U50_RS04370 (G9U50_04370) coiA 835287..836234 (+) 948 WP_000903642.1 competence protein CoiA family protein Machinery gene
  G9U50_RS04375 (G9U50_04375) pepF 836250..838055 (+) 1806 WP_001282908.1 oligoendopeptidase F Regulator
  G9U50_RS04380 (G9U50_04380) - 838250..838876 (+) 627 WP_000736935.1 HAD hydrolase-like protein -
  G9U50_RS04385 (G9U50_04385) - 838950..839657 (+) 708 WP_000250853.1 O-methyltransferase -
  G9U50_RS04390 (G9U50_04390) prsA 839718..840647 (+) 930 WP_000857817.1 peptidylprolyl isomerase PrsA -

Sequence


Protein


Download         Length: 315 a.a.        Molecular weight: 37807.57 Da        Isoelectric Point: 9.5842

>NTDB_id=428841 G9U50_RS04370 WP_000903642.1 835287..836234(+) (coiA) [Streptococcus agalactiae strain ZQ0910]
MLIAKDKQGNLINLLESHPGKGQYFCPTCCSAVRLKAGRIMRRHFAHISLKNCQFYHENESNEHLQLKAKLYMSLSRENE
TMLEHHLPEINQIADLFVNETLALEVQCSRLSEQRLRERTKAYLQADFQVRWLLGEKLWLKHRLTNLHKQFLQFSQSIGF
HIWELDLRLEVLRLKYLIYEDLRGHVYYLSKTCPLSGDVLAFLKWPYQSKNLNFYKVKQDRNIRDYVRQQLRYGNQFWLR
KQEKAYLSGQNLLTQELMMFFPQIQPPRVDTDFCQITNSLTSFYQNFTNYYQKNKNNLDQTLYPPVFYDKIVTKN

Nucleotide


Download         Length: 948 bp        

>NTDB_id=428841 G9U50_RS04370 WP_000903642.1 835287..836234(+) (coiA) [Streptococcus agalactiae strain ZQ0910]
ATGTTAATTGCTAAAGACAAACAAGGAAATTTAATTAATCTACTCGAGTCTCATCCGGGAAAGGGACAGTATTTTTGTCC
AACTTGTTGTTCAGCTGTAAGGTTAAAGGCAGGTCGAATCATGAGAAGACACTTTGCACATATTAGTCTAAAAAATTGTC
AGTTTTATCATGAAAATGAGTCTAATGAGCACTTGCAATTAAAAGCAAAGTTATATATGAGTTTAAGTAGAGAGAATGAA
ACTATGCTCGAGCATCATTTGCCAGAAATTAATCAGATTGCAGATTTATTTGTGAATGAGACATTGGCTTTAGAAGTTCA
GTGTAGCCGACTATCAGAGCAGCGACTCAGGGAGCGAACAAAAGCATATCTACAGGCAGACTTTCAAGTGAGATGGTTAC
TAGGGGAAAAACTCTGGTTAAAGCATCGTTTAACAAATCTACATAAACAATTTTTACAATTTTCTCAAAGTATCGGATTT
CATATTTGGGAGTTAGATTTGAGGTTAGAAGTACTGAGACTAAAATATTTGATTTACGAAGATTTACGCGGACATGTCTA
TTACTTAAGTAAAACTTGCCCTCTTAGTGGAGACGTTCTAGCATTTTTGAAGTGGCCATACCAATCAAAAAATCTAAATT
TTTATAAGGTTAAACAAGACAGAAATATCAGAGATTATGTGCGTCAGCAGTTACGCTATGGCAATCAATTTTGGTTACGA
AAACAAGAAAAGGCCTACCTTTCTGGTCAGAATCTATTGACCCAAGAGCTAATGATGTTTTTTCCTCAAATACAGCCACC
ACGTGTAGATACTGATTTTTGTCAAATAACAAATTCTCTAACATCGTTTTATCAGAATTTTACAAATTATTATCAAAAAA
ATAAGAATAACTTAGACCAAACACTTTATCCCCCTGTATTTTATGATAAAATAGTCACTAAGAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

49.051

100

0.492

  coiA Streptococcus pneumoniae Rx1

49.051

100

0.492

  coiA Streptococcus pneumoniae D39

49.051

100

0.492

  coiA Streptococcus pneumoniae R6

49.051

100

0.492

  coiA Streptococcus mitis NCTC 12261

49.051

100

0.492

  coiA Lactococcus lactis subsp. cremoris KW2

40.062

100

0.41