Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   G4G26_RS20765 Genome accession   NZ_CP049924
Coordinates   4053463..4053981 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain So1b     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4048463..4058981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G26_RS20735 (G4G26_20800) yyaJ 4048969..4050324 (+) 1356 WP_003226851.1 MFS transporter -
  G4G26_RS20740 (G4G26_20805) maa 4050358..4050912 (-) 555 WP_003226849.1 sugar O-acetyltransferase -
  G4G26_RS20745 (G4G26_20810) yyaH 4050930..4051310 (-) 381 WP_029726089.1 VOC family protein -
  G4G26_RS20750 (G4G26_20815) ccpB 4051366..4052301 (-) 936 WP_003226845.1 transcriptional regulator CcpB -
  G4G26_RS20755 (G4G26_20820) xth 4052360..4053118 (-) 759 WP_003226843.1 exodeoxyribonuclease III -
  G4G26_RS20760 (G4G26_20825) rpsR 4053180..4053419 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  G4G26_RS20765 (G4G26_20830) ssbA 4053463..4053981 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  G4G26_RS20770 (G4G26_20835) rpsF 4054022..4054309 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  G4G26_RS20775 (G4G26_20840) ychF 4054420..4055520 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  G4G26_RS20780 (G4G26_20845) yyaE 4055647..4057650 (-) 2004 WP_032676927.1 molybdopterin-dependent oxidoreductase -
  G4G26_RS20785 (G4G26_20850) yyzM 4057701..4057907 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=428771 G4G26_RS20765 WP_003219228.1 4053463..4053981(-) (ssbA) [Bacillus subtilis strain So1b]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=428771 G4G26_RS20765 WP_003219228.1 4053463..4053981(-) (ssbA) [Bacillus subtilis strain So1b]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378